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Navigating Microbiological Food Safety in the Era of Whole-Genome Sequencing

Clinical microbiology reviews, 2016-10, Vol.29 (4), p.837-857

2016

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Choice of reference sequence and assembler for alignment of Listeria monocytogenes short-read sequence data greatly influences rates of error in SNP analyses

PloS one, 2014-08, Vol.9 (8), p.e104579-e104579

2014

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A Bayesian method for identifying associations between response variables and bacterial community composition

PLoS computational biology, 2022-07, Vol.18 (7), p.e1010108-e1010108

2022

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Characterization of the Genomic Diversity of Norovirus in Linked Patients Using a Metagenomic Deep Sequencing Approach

Frontiers in microbiology, 2017-01, Vol.8, p.73-73

2017

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Exploring the Potential of the Microbiome as a Marker of the Geographic Origin of Fresh Seafood

Frontiers in microbiology, 2020-04, Vol.11, p.696-696

2020

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Similar yet different: phylogenomic analysis to delineate Salmonella and Citrobacter species boundaries

BMC genomics, 2020-05, Vol.21 (1), p.377-13, Article 377

2020

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Genetic characterization of norovirus GII.4 variants circulating in Canada using a metagenomic technique

BMC infectious diseases, 2018-10, Vol.18 (1), p.521-521, Article 521

2018

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Gene conversions in the growth hormone gene family of primates: Stronger homogenizing effects in the Hominidae lineage

Genomics (San Diego, Calif.), 2011-09, Vol.98 (3), p.173-181

2011

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Foodborne viral outbreaks associated with frozen produce

Epidemiology and infection, 2019-10, Vol.147, p.e291-e291, Article e291

2019

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Phylum level change in the cecal and fecal gut communities of rats fed diets containing different fermentable substrates supports a role for nitrogen as a factor contributing to community structure

Nutrients, 2015-05, Vol.7 (5), p.3279-3299

2015

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Purifying selection against gene conversions in the folate receptor genes of primates

Genomics (San Diego, Calif.), 2014-01, Vol.103 (1), p.40-47

2014

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Shiga toxin-producing Escherichia coli survives storage in wheat flour for two years

Food microbiology, 2020-05, Vol.87, p.103380-103380, Article 103380

2020

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Characterization of Atypical Shiga Toxin Gene Sequences and Description of Stx2j, a New Subtype

Journal of clinical microbiology, 2022-03, Vol.60 (3), p.e0222921-e0222921

2022

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The mechanisms that regulate Vibrio parahaemolyticus virulence gene expression differ between pathotypes

Microbial genomics, 2018-06, Vol.4 (6)

2018

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The Listeria monocytogenes Core-Genome Sequence Typer (LmCGST): a bioinformatic pipeline for molecular characterization with next-generation sequence data

BMC microbiology, 2015-10, Vol.15 (1), p.224-224, Article 224

2015

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Strong purifying selection against gene conversions in the trypsin genes of primates

Human genetics, 2012-11, Vol.131 (11), p.1739-1749

2012

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Automated centrifugal microfluidic system for the preparation of adaptor-ligated sequencing libraries

Lab on a chip, 2024-01, Vol.24 (2), p.182-196

2024

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Impact of β 2-1 fructan on faecal community change: results from a placebo-controlled, randomised, double-blinded, cross-over study in healthy adults

British journal of nutrition, 2017-09, Vol.118 (6), p.441-453

2017

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Changes detected in the genome sequences of Escherichia coli , Listeria monocytogenes , Vibrio parahaemolyticus , and Salmonella enterica after serial subculturing

Canadian journal of microbiology, 2019-11, Vol.65 (11), p.842

2019

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An Analysis of Factors Associated with 25-Hydroxyvitamin D Levels in White and Non-White Canadians

Journal of AOAC International, 2017-09, Vol.100 (5), p.1345

2017

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Impact of [...]2-1 fructan on faecal community change: results from a placebo-controlled, randomised, double-blinded, cross-over study in healthy adults

British journal of nutrition, 2017-09, Vol.118 (6), p.441

2017

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β2‐1 Fructan Supplementation in Healthy Adults Elicits Host‐Specific Bacterial Responses But Does Not Support a Defined Health Benefit

The FASEB journal, 2017-04, Vol.31 (S1)

2017

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Impact of β2-1 fructan on faecal community change: results from a placebo-controlled, randomised, double-blinded, cross-over study in healthy adults

British journal of nutrition, 2017-09, Vol.118 (6), p.441-453

2017

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Choice of reference-guided sequence assembler and SNP caller for analysis of Listeria monocytogenes short-read sequence data greatly influences rates of error

BMC research notes, 2015-12, Vol.8 (1), p.748-748, Article 748

2015

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Choice of Reference Sequence and Assembler for Alignment of Listeria monocytogenes Short-Read Sequence Data Greatly Influences Rates of Error in SNP Analyses: e104579

PloS one, 2014-08, Vol.9 (8)

2014

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Navigating Microbiological Food Safety in the Era of Whole-Genome Sequencing

Choice of reference sequence and assembler for alignment of Listeria monocytogenes short-read sequence data greatly influences rates of error in SNP analyses

A Bayesian method for identifying associations between response variables and bacterial community composition

Characterization of the Genomic Diversity of Norovirus in Linked Patients Using a Metagenomic Deep Sequencing Approach

Exploring the Potential of the Microbiome as a Marker of the Geographic Origin of Fresh Seafood

Similar yet different: phylogenomic analysis to delineate Salmonella and Citrobacter species boundaries

Genetic characterization of norovirus GII.4 variants circulating in Canada using a metagenomic technique

Gene conversions in the growth hormone gene family of primates: Stronger homogenizing effects in the Hominidae lineage

Foodborne viral outbreaks associated with frozen produce

Phylum level change in the cecal and fecal gut communities of rats fed diets containing different fermentable substrates supports a role for nitrogen as a factor contributing to community structure

Purifying selection against gene conversions in the folate receptor genes of primates

Shiga toxin-producing Escherichia coli survives storage in wheat flour for two years

Characterization of Atypical Shiga Toxin Gene Sequences and Description of Stx2j, a New Subtype

The mechanisms that regulate Vibrio parahaemolyticus virulence gene expression differ between pathotypes

The Listeria monocytogenes Core-Genome Sequence Typer (LmCGST): a bioinformatic pipeline for molecular characterization with next-generation sequence data

Strong purifying selection against gene conversions in the trypsin genes of primates

Automated centrifugal microfluidic system for the preparation of adaptor-ligated sequencing libraries

Impact of β 2-1 fructan on faecal community change: results from a placebo-controlled, randomised, double-blinded, cross-over study in healthy adults

Changes detected in the genome sequences of Escherichia coli , Listeria monocytogenes , Vibrio parahaemolyticus , and Salmonella enterica after serial subculturing

An Analysis of Factors Associated with 25-Hydroxyvitamin D Levels in White and Non-White Canadians

Impact of [...]2-1 fructan on faecal community change: results from a placebo-controlled, randomised, double-blinded, cross-over study in healthy adults

β2‐1 Fructan Supplementation in Healthy Adults Elicits Host‐Specific Bacterial Responses But Does Not Support a Defined Health Benefit

Impact of β2-1 fructan on faecal community change: results from a placebo-controlled, randomised, double-blinded, cross-over study in healthy adults

Choice of reference-guided sequence assembler and SNP caller for analysis of Listeria monocytogenes short-read sequence data greatly influences rates of error

Choice of Reference Sequence and Assembler for Alignment of Listeria monocytogenes Short-Read Sequence Data Greatly Influences Rates of Error in SNP Analyses: e104579

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