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Analysis of the microbiome: Advantages of whole genome shotgun versus 16S amplicon sequencing

Biochemical and biophysical research communications, 2016-01, Vol.469 (4), p.967-977

2016

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Long non-coding RNAs (lncRNAs) NEAT1 and MALAT1 are differentially expressed in severe COVID-19 patients: An integrated single-cell analysis

PloS one, 2022-01, Vol.17 (1), p.e0261242-e0261242

2022

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Effect of the Obesity Epidemic on Kidney Transplantation: Obesity Is Independent of Diabetes as a Risk Factor for Adverse Renal Transplant Outcomes

PloS one, 2016-11, Vol.11 (11), p.e0165712-e0165712

2016

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Transmission Dynamics of Large Coronavirus Disease Outbreak in Homeless Shelter, Chicago, Illinois, USA, 2020

Emerging infectious diseases, 2022-01, Vol.28 (1), p.76-85

2022

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Utilizing longitudinal microbiome taxonomic profiles to predict food allergy via Long Short-Term Memory networks

PLoS computational biology, 2019-02, Vol.15 (2), p.e1006693-e1006693

2019

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WEVOTE: Weighted Voting Taxonomic Identification Method of Microbial Sequences

PloS one, 2016-09, Vol.11 (9), p.e0163527-e0163527

2016

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Imaging systems and algorithms to analyze biological samples in real-time using mobile phone microscopy

PloS one, 2018-03, Vol.13 (3), p.e0193797-e0193797

2018

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Atopic asthmatic immune phenotypes associated with airway microbiota and airway obstruction

PloS one, 2017-10, Vol.12 (10), p.e0184566-e0184566

2017

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Altered transcription factor targeting is associated with differential peripheral blood mononuclear cell proportions in sarcoidosis

Frontiers in immunology, 2022-10, Vol.13, p.848759-848759

2022

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Bronchiolitis obliterans syndrome susceptibility and the pulmonary microbiome

The Journal of heart and lung transplantation, 2018-09, Vol.37 (9), p.1131-1140

2018

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MetaLonDA: a flexible R package for identifying time intervals of differentially abundant features in metagenomic longitudinal studies

Microbiome, 2018-02, Vol.6 (1), p.32-32, Article 32

2018

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Analysis of Exosomal MicroRNA Dynamics in Response to Rhinovirus Challenge in a Longitudinal Case-Control Study of Asthma

Viruses, 2022-11, Vol.14 (11), p.2444

2022

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Perinatal granulopoiesis and risk of pediatric asthma

eLife, 2021-02, Vol.10

2021

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Hubs in biological interaction networks exhibit low changes in expression in experimental asthma

Molecular systems biology, 2007, Vol.3 (1), p.98-n/a

2007

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The Potential for Emerging Microbiome-Mediated Therapeutics in Asthma

Current allergy and asthma reports, 2017-09, Vol.17 (9), p.62-62, Article 62

2017

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Unsupervised Clustering Reveals Sarcoidosis Phenotypes Marked by a Reduction in Lymphocytes Relate to Increased Inflammatory Activity on 18FDG-PET/CT

Frontiers in medicine, 2021-02, Vol.8, p.595077-595077

2021

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Graft produced interleukin-6 functions as a danger signal and promotes rejection after transplantation

Transplantation, 2007-09, Vol.84 (6), p.771

2007

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Trimer IgG and neutralising antibody response to COVID-19 mRNA vaccination in individuals with sarcoidosis

ERJ open research, 2023-01, Vol.9 (1), p.25

2023

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Disruption of innate defense responses by endoglycosidase HPSE promotes cell survival

JCI insight, 2021-04, Vol.6 (7)

2021

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Gene Co-expression Networks Identifies Common Hub Genes Between Cutaneous Sarcoidosis and Discoid Lupus Erythematosus

Frontiers in medicine, 2020-11, Vol.7, p.606461-606461

2020

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Toll-Like Receptor 4 or 2 Agonists Decrease Allergic Inflammation

American journal of respiratory cell and molecular biology, 2005-03, Vol.32 (3), p.218-224

2005

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Re-sampling strategy to improve the estimation of number of null hypotheses in FDR control under strong correlation structures

BMC bioinformatics, 2007-05, Vol.8 (1), p.157-157, Article 157

2007

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Obesity Management and Chronic Kidney Disease

Seminars in nephrology, 2021-07, Vol.41 (4), p.392-402

2021

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Costimulatory molecule OX40L is critical for both Th1 and Th2 responses in allergic inflammation

European journal of immunology, 2002-10, Vol.32 (10), p.2874-2880

2002

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In Situ Methane Determination in Petroleum at High Temperatures and High Pressures with Multivariate Optical Computing

Analytical chemistry (Washington), 2019-12, Vol.91 (24), p.15617-15624

2019

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Analysis of the microbiome: Advantages of whole genome shotgun versus 16S amplicon sequencing

Long non-coding RNAs (lncRNAs) NEAT1 and MALAT1 are differentially expressed in severe COVID-19 patients: An integrated single-cell analysis

Effect of the Obesity Epidemic on Kidney Transplantation: Obesity Is Independent of Diabetes as a Risk Factor for Adverse Renal Transplant Outcomes

Transmission Dynamics of Large Coronavirus Disease Outbreak in Homeless Shelter, Chicago, Illinois, USA, 2020

Utilizing longitudinal microbiome taxonomic profiles to predict food allergy via Long Short-Term Memory networks

WEVOTE: Weighted Voting Taxonomic Identification Method of Microbial Sequences

Imaging systems and algorithms to analyze biological samples in real-time using mobile phone microscopy

Atopic asthmatic immune phenotypes associated with airway microbiota and airway obstruction

Altered transcription factor targeting is associated with differential peripheral blood mononuclear cell proportions in sarcoidosis

Bronchiolitis obliterans syndrome susceptibility and the pulmonary microbiome

MetaLonDA: a flexible R package for identifying time intervals of differentially abundant features in metagenomic longitudinal studies

Analysis of Exosomal MicroRNA Dynamics in Response to Rhinovirus Challenge in a Longitudinal Case-Control Study of Asthma

Perinatal granulopoiesis and risk of pediatric asthma

Hubs in biological interaction networks exhibit low changes in expression in experimental asthma

The Potential for Emerging Microbiome-Mediated Therapeutics in Asthma

Unsupervised Clustering Reveals Sarcoidosis Phenotypes Marked by a Reduction in Lymphocytes Relate to Increased Inflammatory Activity on 18FDG-PET/CT

Graft produced interleukin-6 functions as a danger signal and promotes rejection after transplantation

Trimer IgG and neutralising antibody response to COVID-19 mRNA vaccination in individuals with sarcoidosis

Disruption of innate defense responses by endoglycosidase HPSE promotes cell survival

Gene Co-expression Networks Identifies Common Hub Genes Between Cutaneous Sarcoidosis and Discoid Lupus Erythematosus

Toll-Like Receptor 4 or 2 Agonists Decrease Allergic Inflammation

Re-sampling strategy to improve the estimation of number of null hypotheses in FDR control under strong correlation structures

Obesity Management and Chronic Kidney Disease

Costimulatory molecule OX40L is critical for both Th1 and Th2 responses in allergic inflammation

In Situ Methane Determination in Petroleum at High Temperatures and High Pressures with Multivariate Optical Computing

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