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Editorial: Insights in evolutionary & genomic microbiology: 2022

Frontiers in microbiology, 2023-08, Vol.14, p.1269933-1269933

2023

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Editorial: Rising stars in Evolutionary and Genomic Microbiology: 2022

Frontiers in microbiology, 2022-12, Vol.13, p.1098065-1098065

2022

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A landscape for drug-target interactions based on network analysis

PloS one, 2021-03, Vol.16 (3), p.e0247018

2021

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DeepReg: a deep learning hybrid model for predicting transcription factors in eukaryotic and prokaryotic genomes

Scientific reports, 2024-04, Vol.14 (1), p.9155-9155, Article 9155

2024

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Editorial: Role of transcription factors and sigma factors in bacterial stress physiology

Frontiers in microbiology, 2023-10, Vol.14, p.1291172-1291172

2023

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Abundance, diversity and domain architecture variability in prokaryotic DNA-binding transcription factors

PloS one, 2018-04, Vol.13 (4), p.e0195332-e0195332

2018

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Explainable artificial intelligence as a reliable annotator of archaeal promoter regions

Scientific reports, 2023-01, Vol.13 (1), p.1763-1763, Article 1763

2023

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Tracing back variations in archaeal ESCRT-based cell division to protein domain architectures

PloS one, 2022-03, Vol.17 (3), p.e0266395

2022

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Deciphering the functional diversity of DNA-binding transcription factors in Bacteria and Archaea organisms

PloS one, 2020-08, Vol.15 (8), p.e0237135-e0237135

2020

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Homology-based reconstruction of regulatory networks for bacterial and archaeal genomes

Frontiers in microbiology, 2022-07, Vol.13, p.923105-923105

2022

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Evolution of default genetic control mechanisms

PloS one, 2021-05, Vol.16 (5), p.e0251568-e0251568

2021

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Comparative genomics of DNA-binding transcription factors in archaeal and bacterial organisms

PloS one, 2021-07, Vol.16 (7), p.e0254025-e0254025

2021

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The interaction of InvF-RNAP is mediated by the chaperone SicA in Salmonella sp: an in silico prediction

PeerJ (San Francisco, CA), 2024-03, Vol.12, p.e17069-e17069, Article e17069

2024

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Identifying similarities at metabolic pathways with a strategy of Enzymatic Step Sequences

MethodsX, 2023-01, Vol.10, p.102118-102118, Article 102118

2023

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Gene Regulatory Network Inference and Gene Module Regulating Virulence in Fusarium oxysporum

Frontiers in microbiology, 2022-06, Vol.13, p.861528-861528

2022

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Identification of Modules With Similar Gene Regulation and Metabolic Functions Based on Co-expression Data

Frontiers in molecular biosciences, 2019-12, Vol.6, p.139-139

2019

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Differential Impact of CD43 and CD28 on T-Cell Differentiation Depending on the Order of Engagement with the TCR

International journal of molecular sciences, 2024-03, Vol.25 (6), p.3135

2024

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Machine learning and statistics shape a novel path in archaeal promoter annotation

BMC bioinformatics, 2022-05, Vol.23 (1), p.171-171, Article 171

2022

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Gene Regulatory Networks of Penicillium echinulatum 2HH and Penicillium oxalicum 114-2 Inferred by a Computational Biology Approach

Frontiers in microbiology, 2020-10, Vol.11, p.588263-588263

2020

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A landscape of gene regulation in the parasitic amoebozoa Entamoeba spp

PloS one, 2022-08, Vol.17 (8), p.e0271640-e0271640

2022

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The gene regulatory network of Staphylococcus aureus ST239-SCCmecIII strain Bmb9393 and assessment of genes associated with the biofilm in diverse backgrounds

Frontiers in microbiology, 2023-01, Vol.13, p.1049819-1049819

2023

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A Bibliometric Analysis of Mexican Bioinformatics: A Portrait of Actors, Structure, and Dynamics

Biology (Basel, Switzerland), 2022-01, Vol.11 (1), p.131

2022

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The protein architecture in Bacteria and Archaea identifies a set of promiscuous and ancient domains

PloS one, 2019-12, Vol.14 (12), p.e0226604-e0226604

2019

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Editorial: Systems Modeling: Approaches and Applications

Frontiers in molecular biosciences, 2020-12, Vol.7, p.620464-620464

2020

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Identification of modules and key genes associated with breast cancer subtypes through network analysis

Scientific reports, 2024-05, Vol.14 (1), p.12350-18, Article 12350

2024

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Editorial: Insights in evolutionary & genomic microbiology: 2022

Editorial: Rising stars in Evolutionary and Genomic Microbiology: 2022

A landscape for drug-target interactions based on network analysis

DeepReg: a deep learning hybrid model for predicting transcription factors in eukaryotic and prokaryotic genomes

Editorial: Role of transcription factors and sigma factors in bacterial stress physiology

Abundance, diversity and domain architecture variability in prokaryotic DNA-binding transcription factors

Explainable artificial intelligence as a reliable annotator of archaeal promoter regions

Tracing back variations in archaeal ESCRT-based cell division to protein domain architectures

Deciphering the functional diversity of DNA-binding transcription factors in Bacteria and Archaea organisms

Homology-based reconstruction of regulatory networks for bacterial and archaeal genomes

Evolution of default genetic control mechanisms

Comparative genomics of DNA-binding transcription factors in archaeal and bacterial organisms

The interaction of InvF-RNAP is mediated by the chaperone SicA in Salmonella sp: an in silico prediction

Identifying similarities at metabolic pathways with a strategy of Enzymatic Step Sequences

Gene Regulatory Network Inference and Gene Module Regulating Virulence in Fusarium oxysporum

Identification of Modules With Similar Gene Regulation and Metabolic Functions Based on Co-expression Data

Differential Impact of CD43 and CD28 on T-Cell Differentiation Depending on the Order of Engagement with the TCR

Machine learning and statistics shape a novel path in archaeal promoter annotation

Gene Regulatory Networks of Penicillium echinulatum 2HH and Penicillium oxalicum 114-2 Inferred by a Computational Biology Approach

A landscape of gene regulation in the parasitic amoebozoa Entamoeba spp

The gene regulatory network of Staphylococcus aureus ST239-SCCmecIII strain Bmb9393 and assessment of genes associated with the biofilm in diverse backgrounds

A Bibliometric Analysis of Mexican Bioinformatics: A Portrait of Actors, Structure, and Dynamics

The protein architecture in Bacteria and Archaea identifies a set of promiscuous and ancient domains

Editorial: Systems Modeling: Approaches and Applications

Identification of modules and key genes associated with breast cancer subtypes through network analysis

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