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Pore-forming toxins: ancient, but never really out of fashion

Nature reviews. Microbiology, 2016-02, Vol.14 (2), p.77-92

2016

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A look beyond the QR code of SNARE proteins

Protein science, 2024-09, Vol.33 (9), p.e5158-n/a

2024

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Molecular Effects of Concentrated Solutes on Protein Hydration, Dynamics, and Electrostatics

Biophysical journal, 2016-08, Vol.111 (4), p.743-755

2016

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Palmitoylated acyl protein thioesterase APT2 deforms membranes to extract substrate acyl chains

Nature chemical biology, 2021-04, Vol.17 (4), p.438-447

2021

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ComEA is essential for the transfer of external DNA into the periplasm in naturally transformable Vibrio cholerae cells

PLoS genetics, 2014-01, Vol.10 (1), p.e1004066-e1004066

2014

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Bicc1 ribonucleoprotein complexes specifying organ laterality are licensed by ANKS6-induced structural remodeling of associated ANKS3

PLoS biology, 2023-09, Vol.21 (9), p.e3002302-e3002302

2023

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Critical roles of isoleucine-364 and adjacent residues in a hydrophobic gate control of phospholipid transport by the mammalian P4-ATPase ATP8A2

Proceedings of the National Academy of Sciences - PNAS, 2014-04, Vol.111 (14), p.E1334-E1343

2014

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A coiled coil switch mediates cold sensing by the thermosensory protein DesK

Molecular microbiology, 2015-10, Vol.98 (2), p.258-271

2015

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Structural basis for recognition of bacterial cell wall teichoic acid by pseudo-symmetric SH3b-like repeats of a viral peptidoglycan hydrolase

Chemical science (Cambridge), 2021-01, Vol.12 (2), p.576-589

2021

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Molecular dynamics calculations suggest a conduction mechanism for the M2 proton channel from influenza A virus

Proceedings of the National Academy of Sciences - PNAS, 2009-01, Vol.106 (4), p.1069-1074

2009

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A Biologically-validated HCV E1E2 Heterodimer Structural Model

Scientific reports, 2017-03, Vol.7 (1), p.214-214, Article 214

2017

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Btk SH2-kinase interface is critical for allosteric kinase activation and its targeting inhibits B-cell neoplasms

Nature communications, 2020-05, Vol.11 (1), p.2319-15, Article 2319

2020

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Transmembrane Prolines Mediate Signal Sensing and Decoding in Bacillus subtilis DesK Histidine Kinase

mBio, 2019-11, Vol.10 (6)

2019

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Dissecting the Effects of Concentrated Carbohydrate Solutions on Protein Diffusion, Hydration, and Internal Dynamics

The journal of physical chemistry. B, 2014-05, Vol.118 (20), p.5310-5321

2014

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PeSTo-Carbs: Geometric Deep Learning for Prediction of Protein–Carbohydrate Binding Interfaces

Journal of chemical theory and computation, 2024-04, Vol.20 (8), p.2985-2991

2024

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Dual chaperone role of the C-terminal propeptide in folding and oligomerization of the pore-forming toxin aerolysin

PLoS pathogens, 2011-07, Vol.7 (7), p.e1002135-e1002135

2011

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In situ structural analysis of the Yersinia enterocolitica injectisome

eLife, 2013-07, Vol.2, p.e00792-e00792

2013

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Electrostatic-Consistent Coarse-Grained Potentials for Molecular Simulations of Proteins

Journal of chemical theory and computation, 2013-08, Vol.9 (8), p.3515-3526

2013

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Protein post-translational modifications: In silico prediction tools and molecular modeling

Computational and structural biotechnology journal, 2017, Vol.15, p.307-319

2017

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Disentangling constraints using viability evolution principles in integrative modeling of macromolecular assemblies

Scientific reports, 2017-03, Vol.7 (1), p.235-235, Article 235

2017

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Assembly of the transmembrane domain of E. coli PhoQ histidine kinase: implications for signal transduction from molecular simulations

PLoS computational biology, 2013-01, Vol.9 (1), p.e1002878-e1002878

2013

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Immobilization of the N-terminal helix stabilizes prefusion paramyxovirus fusion proteins

Proceedings of the National Academy of Sciences - PNAS, 2016-07, Vol.113 (27), p.E3844-E3851

2016

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PeSTo: parameter-free geometric deep learning for accurate prediction of protein binding interfaces

Nature communications, 2023-04, Vol.14 (1), p.2175-2175, Article 2175

2023

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The lipopolysaccharide from Capnocytophaga canimorsus reveals an unexpected role of the core-oligosaccharide in MD-2 binding

PLoS pathogens, 2012-05, Vol.8 (5), p.e1002667-e1002667

2012

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A further leap of improvement in tertiary structure prediction in CASP13 prompts new routes for future assessments

Proteins, structure, function, and bioinformatics, 2019-12, Vol.87 (12), p.1100-1112

2019

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Pore-forming toxins: ancient, but never really out of fashion

A look beyond the QR code of SNARE proteins

Molecular Effects of Concentrated Solutes on Protein Hydration, Dynamics, and Electrostatics

Palmitoylated acyl protein thioesterase APT2 deforms membranes to extract substrate acyl chains

ComEA is essential for the transfer of external DNA into the periplasm in naturally transformable Vibrio cholerae cells

Bicc1 ribonucleoprotein complexes specifying organ laterality are licensed by ANKS6-induced structural remodeling of associated ANKS3

Critical roles of isoleucine-364 and adjacent residues in a hydrophobic gate control of phospholipid transport by the mammalian P4-ATPase ATP8A2

A coiled coil switch mediates cold sensing by the thermosensory protein DesK

Structural basis for recognition of bacterial cell wall teichoic acid by pseudo-symmetric SH3b-like repeats of a viral peptidoglycan hydrolase

Molecular dynamics calculations suggest a conduction mechanism for the M2 proton channel from influenza A virus

A Biologically-validated HCV E1E2 Heterodimer Structural Model

Btk SH2-kinase interface is critical for allosteric kinase activation and its targeting inhibits B-cell neoplasms

Transmembrane Prolines Mediate Signal Sensing and Decoding in Bacillus subtilis DesK Histidine Kinase

Dissecting the Effects of Concentrated Carbohydrate Solutions on Protein Diffusion, Hydration, and Internal Dynamics

PeSTo-Carbs: Geometric Deep Learning for Prediction of Protein–Carbohydrate Binding Interfaces

Dual chaperone role of the C-terminal propeptide in folding and oligomerization of the pore-forming toxin aerolysin

In situ structural analysis of the Yersinia enterocolitica injectisome

Electrostatic-Consistent Coarse-Grained Potentials for Molecular Simulations of Proteins

Protein post-translational modifications: In silico prediction tools and molecular modeling

Disentangling constraints using viability evolution principles in integrative modeling of macromolecular assemblies

Assembly of the transmembrane domain of E. coli PhoQ histidine kinase: implications for signal transduction from molecular simulations

Immobilization of the N-terminal helix stabilizes prefusion paramyxovirus fusion proteins

PeSTo: parameter-free geometric deep learning for accurate prediction of protein binding interfaces

The lipopolysaccharide from Capnocytophaga canimorsus reveals an unexpected role of the core-oligosaccharide in MD-2 binding

A further leap of improvement in tertiary structure prediction in CASP13 prompts new routes for future assessments

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