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The trRosetta server for fast and accurate protein structure prediction

Nature protocols, 2021-12, Vol.16 (12), p.5634-5651

2021

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Improved protein structure prediction using predicted interresidue orientations

Proceedings of the National Academy of Sciences - PNAS, 2020-01, Vol.117 (3), p.1496-1503

2020

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High-throughput prediction of RNA, DNA and protein binding regions mediated by intrinsic disorder

Nucleic acids research, 2015-10, Vol.43 (18), p.e121-e121

2015

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Recognition of small molecule–RNA binding sites using RNA sequence and structure

Bioinformatics (Oxford, England), 2021-04, Vol.37 (1), p.36-42

2021

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Exceptionally abundant exceptions: comprehensive characterization of intrinsic disorder in all domains of life

Cellular and molecular life sciences : CMLS, 2015-01, Vol.72 (1), p.137-151

2015

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trRosettaRNA: automated prediction of RNA 3D structure with transformer network

Nature communications, 2023-11, Vol.14 (1), p.7266-7266, Article 7266

2023

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Computational Prediction of MoRFs, Short Disorder-to-order Transitioning Protein Binding Regions

Computational and structural biotechnology journal, 2019-01, Vol.17, p.454-462

2019

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An ensemble approach to protein fold classification by integration of template-based assignment and support vector machine classifier

Bioinformatics (Oxford, England), 2017-03, Vol.33 (6), p.863-870

2017

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Codon selection reduces GC content bias in nucleic acids encoding for intrinsically disordered proteins

Cellular and molecular life sciences : CMLS, 2020-01, Vol.77 (1), p.149-160

2020

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Grazing exclusion had greater effects than nitrogen addition on soil and plant community in a desert steppe, Northwest of China

BMC plant biology, 2022-02, Vol.22 (1), p.60-60, Article 60

2022

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Improved Protein Structure Prediction Using a New Multi‐Scale Network and Homologous Templates

Advanced science, 2021-12, Vol.8 (24), p.e2102592-n/a

2021

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Interplay between the oxidoreductase PDIA6 and microRNA-322 controls the response to disrupted endoplasmic reticulum calcium homeostasis

Science signaling, 2014-06, Vol.7 (329), p.ra54

2014

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Intrinsic disorder in the BK channel and its interactome

PloS one, 2014-04, Vol.9 (4), p.e94331-e94331

2014

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More than just tails: intrinsic disorder in histone proteins

Molecular bioSystems, 2012-01, Vol.8 (7), p.1886-191

2012

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COACH-D: improved protein-ligand binding sites prediction with refined ligand-binding poses through molecular docking

Nucleic acids research, 2018-07, Vol.46 (W1), p.W438-W442

2018

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Accurate Sequence-Based Prediction of Deleterious nsSNPs with Multiple Sequence Profiles and Putative Binding Residues

Biomolecules (Basel, Switzerland), 2021-09, Vol.11 (9), p.1337

2021

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APOD: accurate sequence-based predictor of disordered flexible linkers

Bioinformatics, 2020-12, Vol.36 (Supplement_2), p.i754-i761

2020

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AI accurately predicting the structure of biomolecular interactions

Cell research, 2024-09, Vol.34 (9), p.601-602

2024

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RNA threading with secondary structure and sequence profile

Bioinformatics (Oxford, England), 2024-02, Vol.40 (2)

2024

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Single-sequence protein structure prediction using supervised transformer protein language models

Nature Computational Science, 2022-12, Vol.2 (12), p.804-814

2022

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mTM-align: a server for fast protein structure database search and multiple protein structure alignment

Nucleic acids research, 2018-07, Vol.46 (W1), p.W380

2018

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mTM-align: an algorithm for fast and accurate multiple protein structure alignment

Bioinformatics, 2018-05, Vol.34 (10), p.1719-1725

2018

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Toward the assessment of predicted inter-residue distance

Bioinformatics, 2022-01, Vol.38 (4), p.962-969

2022

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Improving Sequence-Based Prediction of Protein–Peptide Binding Residues by Introducing Intrinsic Disorder and a Consensus Method

Journal of chemical information and modeling, 2018-07, Vol.58 (7), p.1459-1468

2018

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Improving the prediction of protein-nucleic acids binding residues via multiple sequence profiles and the consensus of complementary methods

Bioinformatics, 2019-03, Vol.35 (6), p.930-936

2019

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The trRosetta server for fast and accurate protein structure prediction

Improved protein structure prediction using predicted interresidue orientations

High-throughput prediction of RNA, DNA and protein binding regions mediated by intrinsic disorder

Recognition of small molecule–RNA binding sites using RNA sequence and structure

Exceptionally abundant exceptions: comprehensive characterization of intrinsic disorder in all domains of life

trRosettaRNA: automated prediction of RNA 3D structure with transformer network

Computational Prediction of MoRFs, Short Disorder-to-order Transitioning Protein Binding Regions

An ensemble approach to protein fold classification by integration of template-based assignment and support vector machine classifier

Codon selection reduces GC content bias in nucleic acids encoding for intrinsically disordered proteins

Grazing exclusion had greater effects than nitrogen addition on soil and plant community in a desert steppe, Northwest of China

Improved Protein Structure Prediction Using a New Multi‐Scale Network and Homologous Templates

Interplay between the oxidoreductase PDIA6 and microRNA-322 controls the response to disrupted endoplasmic reticulum calcium homeostasis

Intrinsic disorder in the BK channel and its interactome

More than just tails: intrinsic disorder in histone proteins

COACH-D: improved protein-ligand binding sites prediction with refined ligand-binding poses through molecular docking

Accurate Sequence-Based Prediction of Deleterious nsSNPs with Multiple Sequence Profiles and Putative Binding Residues

APOD: accurate sequence-based predictor of disordered flexible linkers

AI accurately predicting the structure of biomolecular interactions

RNA threading with secondary structure and sequence profile

Single-sequence protein structure prediction using supervised transformer protein language models

mTM-align: a server for fast protein structure database search and multiple protein structure alignment

mTM-align: an algorithm for fast and accurate multiple protein structure alignment

Toward the assessment of predicted inter-residue distance

Improving Sequence-Based Prediction of Protein–Peptide Binding Residues by Introducing Intrinsic Disorder and a Consensus Method

Improving the prediction of protein-nucleic acids binding residues via multiple sequence profiles and the consensus of complementary methods

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