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Computational design of allosteric ribozymes as molecular biosensors

Biotechnology advances, 2014-09, Vol.32 (5), p.1015-1027

Penchovsky, Robert

2014

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Riboswitch distribution, structure, and function in bacteria

Gene, 2019-08, Vol.708, p.38-48

2019

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Targeting SAM-I Riboswitch Using Antisense Oligonucleotide Technology for Inhibiting the Growth of Staphylococcus aureus and Listeria monocytogenes

Antibiotics (Basel), 2022-11, Vol.11 (11), p.1662

2022

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Bioinformatics and Genomic Analyses of the Suitability of Eight Riboswitches for Antibacterial Drug Targets

Antibiotics (Basel), 2022-08, Vol.11 (9), p.1177

2022

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Targeting FMN, TPP, SAM-I, and glmS Riboswitches with Chimeric Antisense Oligonucleotides for Completely Rational Antibacterial Drug Development

Antibiotics (Basel), 2023-11, Vol.12 (11), p.1607

2023

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General and Specific Cytotoxicity of Chimeric Antisense Oligonucleotides in Bacterial Cells and Human Cell Lines

Antibiotics (Basel), 2024-01, Vol.13 (2), p.122

2024

Volltextzugriff (PDF)

Automated DNA hybridization transfer with movable super-paramagnetic microbeads in a microflow reactor

Biosensors & bioelectronics, 2019-06, Vol.135, p.30-35

Penchovsky, Robert

2019

Volltextzugriff (PDF)

Antisense and Functional Nucleic Acids in Rational Drug Development

Antibiotics (Basel), 2024-02, Vol.13 (3), p.221

2024

Volltextzugriff (PDF)

Computational Design and Biosensor Applications of Small Molecule-Sensing Allosteric Ribozymes

Biomacromolecules, 2013-04, Vol.14 (4), p.1240-1249

Penchovsky, Robert

2013

Volltextzugriff (PDF)

Engineering Antisense Oligonucleotides as Antibacterial Agents That Target FMN Riboswitches and Inhibit the Growth of Staphylococcus aureus, Listeria monocytogenes, and Escherichia coli

ACS synthetic biology, 2022-05, Vol.11 (5), p.1845-1855

2022

Volltextzugriff (PDF)

Genome-wide bioinformatics analysis of FMN, SAM-I, glmS, TPP, lysine, purine, cobalamin, and SAH riboswitches for their applications as allosteric antibacterial drug targets in human pathogenic bacteria

Expert opinion on therapeutic targets, 2019-07, Vol.23 (7), p.631-643

2019

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An allosteric ribozyme generator and an inverse folding ribozyme generator: Two computer programs for automated computational design of oligonucleotide-sensing allosteric hammerhead ribozymes with YES Boolean logic function based on experimentally validated algorithms

Computers in biology and medicine, 2022-06, Vol.145, p.105469-105469, Article 105469

2022

Volltextzugriff (PDF)

Programmable and automated bead-based microfluidics for versatile DNA microarrays under isothermal conditions

Lab on a chip, 2013-06, Vol.13 (12), p.2370-2380

Penchovsky, Robert

2013

Volltextzugriff (PDF)

GHOST-NOT and GHOST-YES: Two programs for generating high-speed biosensors with randomized oligonucleotide binding sites with NOT or YES Boolean logic functions based on experimentally validated algorithms

Journal of biotechnology, 2023-08, Vol.373, p.82-89

2023

Volltextzugriff (PDF)

Designing drugs that overcome antibacterial resistance: where do we stand and what should we do?

Expert opinion on drug discovery, 2015-06, Vol.10 (6), p.631-650

2015

Volltextzugriff (PDF)

Molecular factors affecting tomato fruit size

Plant gene, 2023-03, Vol.33, p.100395, Article 100395

2023

Volltextzugriff (PDF)

Engineering Integrated Digital Circuits with Allosteric Ribozymes for Scaling up Molecular Computation and Diagnostics

ACS synthetic biology, 2012-10, Vol.1 (10), p.471-482

Penchovsky, Robert

2012

Volltextzugriff (PDF)

Phycoremediation of wastewater by microalgae: a review

Environmental chemistry letters, 2021-08, Vol.19 (4), p.2905-2920

2021

Volltextzugriff (PDF)

Programmable and automated bead-based microfluidics for versatile DNA microarrays under isothermal conditionsElectronic supplementary information (ESI) available. See DOI: 10.1039/c3lc50208b

Penchovsky, Robert

2013-05

Volltextzugriff (PDF)

Lignocellulose, algal biomass, biofuels and biohydrogen: a review

Environmental chemistry letters, 2021-08, Vol.19 (4), p.2809-2824

2021

Volltextzugriff (PDF)

RSwitch: A Novel Bioinformatics Database on Riboswitches as Antibacterial Drug Targets

IEEE/ACM transactions on computational biology and bioinformatics, 2021-03, Vol.18 (2), p.804-808

2021

Volltextzugriff (PDF)

Development and Application of a High-Throughput Assay for glmS Riboswitch Activators

RNA biology, 2006-04, Vol.3 (2), p.77-81

2006

Volltextzugriff (PDF)

Environmental factors influencing the transmission of the coronavirus 2019: a review

Environmental chemistry letters, 2022, Vol.20 (3), p.1603-1610

2022

Volltextzugriff (PDF)

EBWS: Essential Bioinformatics Web Services for Sequence Analyses

IEEE/ACM transactions on computational biology and bioinformatics, 2019-05, Vol.16 (3), p.942-953

2019

Volltextzugriff (PDF)

Targeting glmS Ribozyme with Chimeric Antisense Oligonucleotides for Antibacterial Drug Development

ACS synthetic biology, 2021-11, Vol.10 (11), p.3167-3176

2021

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Computational design of allosteric ribozymes as molecular biosensors

Riboswitch distribution, structure, and function in bacteria

Targeting SAM-I Riboswitch Using Antisense Oligonucleotide Technology for Inhibiting the Growth of Staphylococcus aureus and Listeria monocytogenes

Bioinformatics and Genomic Analyses of the Suitability of Eight Riboswitches for Antibacterial Drug Targets

Targeting FMN, TPP, SAM-I, and glmS Riboswitches with Chimeric Antisense Oligonucleotides for Completely Rational Antibacterial Drug Development

General and Specific Cytotoxicity of Chimeric Antisense Oligonucleotides in Bacterial Cells and Human Cell Lines

Automated DNA hybridization transfer with movable super-paramagnetic microbeads in a microflow reactor

Antisense and Functional Nucleic Acids in Rational Drug Development

Computational Design and Biosensor Applications of Small Molecule-Sensing Allosteric Ribozymes

Engineering Antisense Oligonucleotides as Antibacterial Agents That Target FMN Riboswitches and Inhibit the Growth of Staphylococcus aureus, Listeria monocytogenes, and Escherichia coli

Genome-wide bioinformatics analysis of FMN, SAM-I, glmS, TPP, lysine, purine, cobalamin, and SAH riboswitches for their applications as allosteric antibacterial drug targets in human pathogenic bacteria

An allosteric ribozyme generator and an inverse folding ribozyme generator: Two computer programs for automated computational design of oligonucleotide-sensing allosteric hammerhead ribozymes with YES Boolean logic function based on experimentally validated algorithms

Programmable and automated bead-based microfluidics for versatile DNA microarrays under isothermal conditions

GHOST-NOT and GHOST-YES: Two programs for generating high-speed biosensors with randomized oligonucleotide binding sites with NOT or YES Boolean logic functions based on experimentally validated algorithms

Designing drugs that overcome antibacterial resistance: where do we stand and what should we do?

Molecular factors affecting tomato fruit size

Engineering Integrated Digital Circuits with Allosteric Ribozymes for Scaling up Molecular Computation and Diagnostics

Phycoremediation of wastewater by microalgae: a review

Programmable and automated bead-based microfluidics for versatile DNA microarrays under isothermal conditionsElectronic supplementary information (ESI) available. See DOI: 10.1039/c3lc50208b

Lignocellulose, algal biomass, biofuels and biohydrogen: a review

RSwitch: A Novel Bioinformatics Database on Riboswitches as Antibacterial Drug Targets

Development and Application of a High-Throughput Assay for glmS Riboswitch Activators

Environmental factors influencing the transmission of the coronavirus 2019: a review

EBWS: Essential Bioinformatics Web Services for Sequence Analyses

Targeting glmS Ribozyme with Chimeric Antisense Oligonucleotides for Antibacterial Drug Development

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