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Integrative classification of human coding and noncoding genes through RNA metabolism profiles

Nature structural & molecular biology, 2017-01, Vol.24 (1), p.86

2017

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Computational methods for RNA modification detection from nanopore direct RNA sequencing data

RNA biology, 2021-10, Vol.18 (S1), p.31-40

2021

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Ontology-driven integrative analysis of omics data through Onassis

Scientific reports, 2020-01, Vol.10 (1), p.703-703, Article 703

2020

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Widespread dynamic DNA methylation in response to biotic stress

Proceedings of the National Academy of Sciences - PNAS, 2012-08, Vol.109 (32), p.E2183-E2191

2012

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Patterns of population epigenomic diversity

Nature (London), 2013-03, Vol.495 (7440), p.193-198

2013

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Temporal transcriptional response to ethylene gas drives growth hormone cross-regulation in Arabidopsis

eLife, 2013-06, Vol.2, p.e00675-e00675

2013

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Degradation dynamics of microRNAs revealed by a novel pulse-chase approach

Genome research, 2016-04, Vol.26 (4), p.554

2016

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Selective transcriptional regulation by Myc in cellular growth control and lymphomagenesis

Nature (London), 2014-07, Vol.511 (7510), p.488-492

2014

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Hotspots of aberrant epigenomic reprogramming in human induced pluripotent stem cells

Nature (London), 2011-03, Vol.471 (7336), p.68-73

2011

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New insight into the catalytic -dependent and -independent roles of METTL3 in sustaining aberrant translation in chronic myeloid leukemia

Cell death & disease, 2021-09, Vol.12 (10), p.870-870, Article 870

2021

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Global DNA hypomethylation coupled to repressive chromatin domain formation and gene silencing in breast cancer

Genome research, 2012-02, Vol.22 (2), p.246

2012

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Distinct Epigenomic Landscapes of Pluripotent and Lineage-Committed Human Cells

Cell stem cell, 2010-05, Vol.6 (5), p.479-491

2010

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The DNA methylome

FEBS letters, 2011-07, Vol.585 (13), p.1994-2000

2011

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INSPEcT-GUI Reveals the Impact of the Kinetic Rates of RNA Synthesis, Processing, and Degradation, on Premature and Mature RNA Species

Frontiers in genetics, 2020-07, Vol.11, p.759-759

2020

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Macrophages fine tune satellite cell fate in dystrophic skeletal muscle of mdx mice

PLoS genetics, 2019-10, Vol.15 (10), p.e1008408-e1008408

2019

Volltextzugriff (PDF)

m6A-Dependent RNA Dynamics in T Cell Differentiation

Genes, 2019-01, Vol.10 (1), p.28

2019

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Depletion of Mettl3 in cholinergic neurons causes adult-onset neuromuscular degeneration

Cell reports (Cambridge), 2024-04, Vol.43 (4), p.113999-113999, Article 113999

2024

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Direct RNA Sequencing for the Study of Synthesis, Processing, and Degradation of Modified Transcripts

Frontiers in genetics, 2020-04, Vol.11, p.394

2020

Volltextzugriff (PDF)

methylPipe and compEpiTools: a suite of R packages for the integrative analysis of epigenomics data

BMC bioinformatics, 2015-09, Vol.16 (1), p.313-313, Article 313

2015

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Genome-wide screen of promoter methylation identifies novel markers in melanoma

Genome Research, 2009-08, Vol.19 (8), p.1462-1470

2009

Volltextzugriff (PDF)

INSPEcT: a computational tool to infer mRNA synthesis, processing and degradation dynamics from RNA- and 4sU-seq time course experiments

Bioinformatics, 2015-09, Vol.31 (17), p.2829-2835

2015

Volltextzugriff (PDF)

Editorial: Computational Epitranscriptomics: Bioinformatic Approaches for the Analysis of RNA Modifications

Frontiers in genetics, 2020-12, Vol.11, p.630360-630360

2020

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DNA methylation dynamics during embryonic development and postnatal maturation of the mouse auditory sensory epithelium

Scientific reports, 2018-11, Vol.8 (1), p.17348-15, Article 17348

2018

Volltextzugriff (PDF)

MEDME: an experimental and analytical methodology for the estimation of DNA methylation levels based on microarray derived MeDIP-enrichment

Genome Research, 2008-10, Vol.18 (10), p.1652-1659

2008

Volltextzugriff (PDF)

Statistical Similarities between Transcriptomics and Quantitative Shotgun Proteomics Data

Molecular & cellular proteomics, 2008-04, Vol.7 (4), p.631-644

2008

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Integrative classification of human coding and noncoding genes through RNA metabolism profiles

Computational methods for RNA modification detection from nanopore direct RNA sequencing data

Ontology-driven integrative analysis of omics data through Onassis

Widespread dynamic DNA methylation in response to biotic stress

Patterns of population epigenomic diversity

Temporal transcriptional response to ethylene gas drives growth hormone cross-regulation in Arabidopsis

Degradation dynamics of microRNAs revealed by a novel pulse-chase approach

Selective transcriptional regulation by Myc in cellular growth control and lymphomagenesis

Hotspots of aberrant epigenomic reprogramming in human induced pluripotent stem cells

New insight into the catalytic -dependent and -independent roles of METTL3 in sustaining aberrant translation in chronic myeloid leukemia

Global DNA hypomethylation coupled to repressive chromatin domain formation and gene silencing in breast cancer

Distinct Epigenomic Landscapes of Pluripotent and Lineage-Committed Human Cells

The DNA methylome

INSPEcT-GUI Reveals the Impact of the Kinetic Rates of RNA Synthesis, Processing, and Degradation, on Premature and Mature RNA Species

Macrophages fine tune satellite cell fate in dystrophic skeletal muscle of mdx mice

m6A-Dependent RNA Dynamics in T Cell Differentiation

Depletion of Mettl3 in cholinergic neurons causes adult-onset neuromuscular degeneration

Direct RNA Sequencing for the Study of Synthesis, Processing, and Degradation of Modified Transcripts

methylPipe and compEpiTools: a suite of R packages for the integrative analysis of epigenomics data

Genome-wide screen of promoter methylation identifies novel markers in melanoma

INSPEcT: a computational tool to infer mRNA synthesis, processing and degradation dynamics from RNA- and 4sU-seq time course experiments

Editorial: Computational Epitranscriptomics: Bioinformatic Approaches for the Analysis of RNA Modifications

DNA methylation dynamics during embryonic development and postnatal maturation of the mouse auditory sensory epithelium

MEDME: an experimental and analytical methodology for the estimation of DNA methylation levels based on microarray derived MeDIP-enrichment

Statistical Similarities between Transcriptomics and Quantitative Shotgun Proteomics Data

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