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Comprehensive evaluation and characterisation of short read general-purpose structural variant calling software

Nature communications, 2019-07, Vol.10 (1), p.3240-11, Article 3240

2019

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GRIDSS: sensitive and specific genomic rearrangement detection using positional de Bruijn graph assembly

Genome research, 2017-12, Vol.27 (12), p.2050

2017

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A single‐cell RNA expression atlas of normal, preneoplastic and tumorigenic states in the human breast

The EMBO journal, 2021-06, Vol.40 (11), p.e107333-n/a

2021

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MaveDB: an open-source platform to distribute and interpret data from multiplexed assays of variant effect

Genome Biology, 2019-11, Vol.20 (1), p.223-11, Article 223

2019

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Targeting of the Tumor Suppressor GRHL3 by a miR-21-Dependent Proto-Oncogenic Network Results in PTEN Loss and Tumorigenesis

Cancer cell, 2011-11, Vol.20 (5), p.635-648

2011

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GRIDSS2: comprehensive characterisation of somatic structural variation using single breakend variants and structural variant phasing

Genome Biology, 2021-07, Vol.22 (1), p.202-202, Article 202

2021

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A statistical framework for analyzing deep mutational scanning data

Genome Biology, 2017-08, Vol.18 (1), p.150-150, Article 150

2017

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Determination of RNA structural diversity and its role in HIV-1 RNA splicing

Nature (London), 2020-06, Vol.582 (7812), p.438-442

2020

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tidybulk: an R tidy framework for modular transcriptomic data analysis

Genome Biology, 2021-01, Vol.22 (1), p.42-15, Article 42

2021

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Complementarity and redundancy of IL-22-producing innate lymphoid cells

Nature immunology, 2016-02, Vol.17 (2), p.179

2016

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Malaria parasite DNA-harbouring vesicles activate cytosolic immune sensors

Nature communications, 2017-12, Vol.8 (1), p.1985-15, Article 1985

2017

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Diversity of conotoxin gene superfamilies in the venomous snail, Conus victoriae

PloS one, 2014-02, Vol.9 (2), p.e87648

2014

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The Hippo pathway oncoprotein YAP promotes melanoma cell invasion and spontaneous metastasis

Oncogene, 2020-07, Vol.39 (30), p.5267-5281

2020

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Detection of cell-free microbial DNA using a contaminant-controlled analysis framework

Genome Biology, 2021-06, Vol.22 (1), p.187-187, Article 187

2021

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Somatic mutations in early metazoan genes disrupt regulatory links between unicellular and multicellular genes in cancer

eLife, 2019-02, Vol.8

2019

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Disruption of metazoan gene regulatory networks in cancer alters the balance of co-expression between genes of unicellular and multicellular origins

Genome Biology, 2024-04, Vol.25 (1), p.110-25, Article 110

2024

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MTOR signaling orchestrates stress-induced mutagenesis, facilitating adaptive evolution in cancer

Science (American Association for the Advancement of Science), 2020-06, Vol.368 (6495), p.1127-1131

2020

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T-Cell Receptor Therapy in the Treatment of Ovarian Cancer: A Mini Review

Frontiers in immunology, 2021-04, Vol.12, p.672502-672502

2021

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The Plasmodium falciparum transcriptome in severe malaria reveals altered expression of genes involved in important processes including surface antigen-encoding var genes

PLoS biology, 2018-03, Vol.16 (3), p.e2004328-e2004328

2018

Volltextzugriff (PDF)

The Architecture and Evolution of Cancer Neochromosomes

Cancer cell, 2014-11, Vol.26 (5), p.653-667

2014

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Circulating tumour DNA reflects treatment response and clonal evolution in chronic lymphocytic leukaemia

Nature communications, 2017-03, Vol.8 (1), p.14756-14756, Article 14756

2017

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Optical mapping reveals a higher level of genomic architecture of chained fusions in cancer

Genome research, 2018-05, Vol.28 (5), p.726

2018

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Evolutionary analyses of the major variant surface antigen-encoding genes reveal population structure of Plasmodium falciparum within and between continents

PLoS genetics, 2021-02, Vol.17 (2), p.e1009269-e1009269

2021

Volltextzugriff (PDF)

CLOVE: classification of genomic fusions into structural variation events

BMC bioinformatics, 2017-07, Vol.18 (1), p.346-346, Article 346

2017

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The immune gene repertoire of an important viral reservoir, the Australian black flying fox

BMC genomics, 2012-06, Vol.13 (1), p.261-261, Article 261

2012

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Comprehensive evaluation and characterisation of short read general-purpose structural variant calling software

GRIDSS: sensitive and specific genomic rearrangement detection using positional de Bruijn graph assembly

A single‐cell RNA expression atlas of normal, preneoplastic and tumorigenic states in the human breast

MaveDB: an open-source platform to distribute and interpret data from multiplexed assays of variant effect

Targeting of the Tumor Suppressor GRHL3 by a miR-21-Dependent Proto-Oncogenic Network Results in PTEN Loss and Tumorigenesis

GRIDSS2: comprehensive characterisation of somatic structural variation using single breakend variants and structural variant phasing

A statistical framework for analyzing deep mutational scanning data

Determination of RNA structural diversity and its role in HIV-1 RNA splicing

tidybulk: an R tidy framework for modular transcriptomic data analysis

Complementarity and redundancy of IL-22-producing innate lymphoid cells

Malaria parasite DNA-harbouring vesicles activate cytosolic immune sensors

Diversity of conotoxin gene superfamilies in the venomous snail, Conus victoriae

The Hippo pathway oncoprotein YAP promotes melanoma cell invasion and spontaneous metastasis

Detection of cell-free microbial DNA using a contaminant-controlled analysis framework

Somatic mutations in early metazoan genes disrupt regulatory links between unicellular and multicellular genes in cancer

Disruption of metazoan gene regulatory networks in cancer alters the balance of co-expression between genes of unicellular and multicellular origins

MTOR signaling orchestrates stress-induced mutagenesis, facilitating adaptive evolution in cancer

T-Cell Receptor Therapy in the Treatment of Ovarian Cancer: A Mini Review

The Plasmodium falciparum transcriptome in severe malaria reveals altered expression of genes involved in important processes including surface antigen-encoding var genes

The Architecture and Evolution of Cancer Neochromosomes

Circulating tumour DNA reflects treatment response and clonal evolution in chronic lymphocytic leukaemia

Optical mapping reveals a higher level of genomic architecture of chained fusions in cancer

Evolutionary analyses of the major variant surface antigen-encoding genes reveal population structure of Plasmodium falciparum within and between continents

CLOVE: classification of genomic fusions into structural variation events

The immune gene repertoire of an important viral reservoir, the Australian black flying fox

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