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CHIMERA_NA: A Customizable Mutagenesis Tool for Structural Manipulations in Nucleic Acids and Their Complexes

ACS omega, 2024-09, Vol.9 (38), p.40061-40066

Pant, Pradeep

2024

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Harmonizing Interstrand Electrostatic Repulsion by Conformational Rigidity in Counterion-Deprived Z‑DNA: A Molecular Dynamics Study

The journal of physical chemistry. B, 2022-12, Vol.126 (48), p.9956-9963

Pant, Pradeep

2022

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Flexible RNA aptamers as inhibitors of Bacillus anthracis ribosomal protein S8: Insights from molecular dynamics simulations

Biophysical chemistry, 2024-09, Vol.312, p.107273, Article 107273

Pant, Pradeep

2024

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Design and Characterization of Neutral Linker‐Based Bis‐Intercalator via Computer Simulations: Balancing DNA Binding and Cellular Uptake

Chemistry & biodiversity, 2024-10, Vol.21 (10), p.e202400768-n/a

Pant, Pradeep

2024

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Limonene inhibits virulence associated traits in Candida albicans: In-vitro and in-silico studies

Phytomedicine Plus : International journal of phytotherapy and phytopharmacology, 2022-08, Vol.2 (3), p.100285, Article 100285

2022

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Lactosmart: A Novel Therapeutic Molecule for Antimicrobial Defense

Frontiers in microbiology, 2021-06, Vol.12, p.672589-672589

2021

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Cdc4 phospho-degrons allow differential regulation of Ame1CENP-U protein stability across the cell cycle

eLife, 2021-07, Vol.10

2021

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Structure-Based Virtual Screening and Biochemical Validation to Discover a Potential Inhibitor of the SARS-CoV‑2 Main Protease

ACS omega, 2020-12, Vol.5 (51), p.33151-33161

2020

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Probing the Nucleic Acid Flexibility to Disarm the Viral Counter-Defense Machinery: Design and Characterization of Potent p19 Inhibitors

The journal of physical chemistry. B, 2023-10, Vol.127 (41), p.8842-8851

2023

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DNA triplex with conformationally locked sugar disintegrates to duplex: Insights from molecular simulations

Biochemical and biophysical research communications, 2020-11, Vol.532 (4), p.662-667

2020

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Assessing the DNA structural integrity via selective annihilation of Watson-Crick hydrogen bonds: Insights from molecular dynamics simulations

Biophysical chemistry, 2022-03, Vol.282, p.106758-106758, Article 106758

2022

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Marshall's nucleic acid: From double-helical structure to a potent intercalator

Biophysical chemistry, 2021-02, Vol.269, p.106525, Article 106525

2021

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Energy and exergy performance evaluation of a typical solar photovoltaic module

Thermal science, 2015, Vol.19 (suppl. 2), p.625-636

2015

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C5′ omitted DNA enhances bendability and protein binding

Biochemical and biophysical research communications, 2019-06, Vol.514 (3), p.979-984

2019

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Symmetric Nucleosides as Potent Purine Nucleoside Phosphorylase Inhibitors

The journal of physical chemistry. B, 2021-03, Vol.125 (11), p.2856-2862

2021

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Bicyclo-DNA mimics with enhanced protein binding affinities: insights from molecular dynamics simulations

Journal of biomolecular structure & dynamics, 2023-06, Vol.41 (9), p.4040-4047

2023

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Bases immediate upstream of the TATAAT box of the sigma 70 promoter of Escherichia coli significantly influence the activity of a model promoter by altering the bending angle of DNA

Gene, 2023-01, Vol.851, p.146968-146968, Article 146968

2023

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Identification of potential drug candidates to combat COVID-19: a structural study using the main protease (mpro) of SARS-CoV-2

Journal of biomolecular structure & dynamics, 2021-11, Vol.39 (17), p.6649-6659

2021

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Symmetrization of the backbone of nucleic acids: a molecular dynamics study

Journal of biomolecular structure & dynamics, 2020-02, Vol.38 (3), p.673-681

2020

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Manufacturing Defect Detection in Ceiling Fans using Image processing

International journal of innovative technology and exploring engineering, 2019-08, Vol.8 (9S2), p.192-195

2019

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Discovery of the Lead Molecules Targeting the First Step of the Histidine Biosynthesis Pathway of Acinetobacter baumannii

Journal of chemical information and modeling, 2022-04, Vol.62 (7), p.1744-1759

2022

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Identification of promising drug candidates against NSP16 of SARS-CoV-2 through computational drug repurposing study

Journal of biomolecular structure & dynamics, 2021-11, Vol.39 (17), p.6713-6727

2021

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Design, synthesis and glycosidase inhibition studies of novel triazole fused iminocyclitol-δ-lactams

Organic & biomolecular chemistry, 2019-01, Vol.17 (5), p.1130-1140

2019

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Virtual screening of quinoline derived library for SARS-COV-2 targeting viral entry and replication

Journal of biomolecular structure & dynamics, 2022-11, Vol.40 (18), p.8464-8493

2022

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Design, synthesis and glycosidase inhibition studies of novel triazole fused iminocyclitol-δ-lactamsElectronic supplementary information (ESI) available: Complete experimental details, copies of NMR spectra (1H and 13C) for all new compounds. See DOI: 10.1039/c8ob03084g

2019-01

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CHIMERA_NA: A Customizable Mutagenesis Tool for Structural Manipulations in Nucleic Acids and Their Complexes

Harmonizing Interstrand Electrostatic Repulsion by Conformational Rigidity in Counterion-Deprived Z‑DNA: A Molecular Dynamics Study

Flexible RNA aptamers as inhibitors of Bacillus anthracis ribosomal protein S8: Insights from molecular dynamics simulations

Design and Characterization of Neutral Linker‐Based Bis‐Intercalator via Computer Simulations: Balancing DNA Binding and Cellular Uptake

Limonene inhibits virulence associated traits in Candida albicans: In-vitro and in-silico studies

Lactosmart: A Novel Therapeutic Molecule for Antimicrobial Defense

Cdc4 phospho-degrons allow differential regulation of Ame1CENP-U protein stability across the cell cycle

Structure-Based Virtual Screening and Biochemical Validation to Discover a Potential Inhibitor of the SARS-CoV‑2 Main Protease

Probing the Nucleic Acid Flexibility to Disarm the Viral Counter-Defense Machinery: Design and Characterization of Potent p19 Inhibitors

DNA triplex with conformationally locked sugar disintegrates to duplex: Insights from molecular simulations

Assessing the DNA structural integrity via selective annihilation of Watson-Crick hydrogen bonds: Insights from molecular dynamics simulations

Marshall's nucleic acid: From double-helical structure to a potent intercalator

Energy and exergy performance evaluation of a typical solar photovoltaic module

C5′ omitted DNA enhances bendability and protein binding

Symmetric Nucleosides as Potent Purine Nucleoside Phosphorylase Inhibitors

Bicyclo-DNA mimics with enhanced protein binding affinities: insights from molecular dynamics simulations

Bases immediate upstream of the TATAAT box of the sigma 70 promoter of Escherichia coli significantly influence the activity of a model promoter by altering the bending angle of DNA

Identification of potential drug candidates to combat COVID-19: a structural study using the main protease (mpro) of SARS-CoV-2

Symmetrization of the backbone of nucleic acids: a molecular dynamics study

Manufacturing Defect Detection in Ceiling Fans using Image processing

Discovery of the Lead Molecules Targeting the First Step of the Histidine Biosynthesis Pathway of Acinetobacter baumannii

Identification of promising drug candidates against NSP16 of SARS-CoV-2 through computational drug repurposing study

Design, synthesis and glycosidase inhibition studies of novel triazole fused iminocyclitol-δ-lactams

Virtual screening of quinoline derived library for SARS-COV-2 targeting viral entry and replication

Design, synthesis and glycosidase inhibition studies of novel triazole fused iminocyclitol-δ-lactamsElectronic supplementary information (ESI) available: Complete experimental details, copies of NMR spectra (1H and 13C) for all new compounds. See DOI: 10.1039/c8ob03084g

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