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Conserved human effector Treg cell transcriptomic and epigenetic signature in arthritic joint inflammation

Nature communications, 2021-05, Vol.12 (1), p.2710-2710, Article 2710

2021

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Parameter optimization for stable clustering using FlowSOM: a case study from CyTOF

Frontiers in immunology, 2024-10, Vol.15, p.1414400

2024

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Enrichment of SARS-CoV-2 Entry Factors and Interacting Intracellular Genes in Tissue and Circulating Immune Cells

Viruses, 2021-09, Vol.13 (9), p.1757

2021

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Machine learning in rheumatology approaches the clinic

Nature reviews. Rheumatology, 2020-02, Vol.16 (2), p.69-70

2020

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Differential trends in the codon usage patterns in HIV-1 genes

PloS one, 2011-12, Vol.6 (12), p.e28889-e28889

2011

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Stochastic Inheritance of Division and Death Times Determines the Size and Phenotype of CD8 + T Cell Families

Frontiers in immunology, 2019-03, Vol.10, p.436-436

2019

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Galectin-9 is an easy to measure biomarker for the interferon signature in systemic lupus erythematosus and antiphospholipid syndrome

Annals of the rheumatic diseases, 2018-12, Vol.77 (12), p.1810-1814

2018

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Transcriptome network analysis implicates CX3CR1-positive type 3 dendritic cells in non-infectious uveitis

eLife, 2023-04, Vol.12

2023

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Integration of Immunome With Disease-Gene Network Reveals Common Cellular Mechanisms Between IMIDs and Drug Repurposing Strategies

Frontiers in immunology, 2021-05, Vol.12, p.669400-669400

2021

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RegEnrich gene regulator enrichment analysis reveals a key role of the ETS transcription factor family in interferon signaling

Communications biology, 2022-01, Vol.5 (1), p.31-12, Article 31

2022

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Finding Gene Regulatory Networks in Psoriasis: Application of a Tree-Based Machine Learning Approach

Frontiers in immunology, 2022-07, Vol.13, p.921408-921408

2022

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microRNA downregulation in plasmacytoid dendritic cells in interferon-positive systemic lupus erythematosus and antiphospholipid syndrome

Rheumatology (Oxford, England), 2018-09, Vol.57 (9), p.1669-1674

2018

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Unraveling IFN-I response dynamics and TNF crosstalk in the pathophysiology of systemic lupus erythematosus

Frontiers in immunology, 2024-03, Vol.15, p.1322814-1322814

2024

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Characterization of Long Non-Coding RNAs in Systemic Sclerosis Monocytes: A Potential Role for PSMB8-AS1 in Altered Cytokine Secretion

International journal of molecular sciences, 2021-04, Vol.22 (9), p.4365

2021

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The Transcriptomic Profile of Monocytes from Patients With Sjögren's Syndrome Is Associated With Inflammatory Parameters and Is Mimicked by Circulating Mediators

Frontiers in immunology, 2021-08, Vol.12, p.701656-701656

2021

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Compartmentalization and persistence of dominant (regulatory) T cell clones indicates antigen skewing in juvenile idiopathic arthritis

eLife, 2023-01, Vol.12

2023

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Lymphoid and myeloid immune cell reconstitution after nicotinamide-expanded cord blood transplantation

Bone marrow transplantation (Basingstoke), 2021-11, Vol.56 (11), p.2826-2833

2021

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Plasmacytoid DCs From Patients With Sjögren's Syndrome Are Transcriptionally Primed for Enhanced Pro-inflammatory Cytokine Production

Frontiers in immunology, 2019-09, Vol.10, p.2096-2096

2019

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Transcriptome Analysis of CCR9+ T Helper Cells From Primary Sjögren's Syndrome Patients Identifies CCL5 as a Novel Effector Molecule

Frontiers in immunology, 2021-07, Vol.12, p.702733-702733

2021

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A Disease-Associated MicroRNA Cluster Links Inflammatory Pathways and an Altered Composition of Leukocyte Subsets to Noninfectious Uveitis

Investigative ophthalmology & visual science, 2018-02, Vol.59 (2), p.878-888

2018

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CXCL4 Links Inflammation and Fibrosis by Reprogramming Monocyte-Derived Dendritic Cells in vitro

Frontiers in immunology, 2020-09, Vol.11, p.2149-2149

2020

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Characterization of the ferret TRB locus guided by V, D, J, and C gene expression analysis

Immunogenetics (New York), 2020-02, Vol.72 (1-2), p.101-108

2020

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The memory of a killer T cell: models of CD8+ T cell differentiation

Immunology and cell biology, 2016-03, Vol.94 (3), p.236-241

2016

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Whole Transcriptome Analysis Reveals Heterogeneity in B Cell Memory Populations in Patients With Juvenile Idiopathic Arthritis-Associated Uveitis

Frontiers in immunology, 2020-09, Vol.11, p.2170-2170

2020

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Multi‐omics integration reveals a core network involved in host defence and hyperkeratinization in psoriasis

Clinical and translational medicine, 2022-12, Vol.12 (12), p.e976-n/a

2022

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Conserved human effector Treg cell transcriptomic and epigenetic signature in arthritic joint inflammation

Parameter optimization for stable clustering using FlowSOM: a case study from CyTOF

Enrichment of SARS-CoV-2 Entry Factors and Interacting Intracellular Genes in Tissue and Circulating Immune Cells

Machine learning in rheumatology approaches the clinic

Differential trends in the codon usage patterns in HIV-1 genes

Stochastic Inheritance of Division and Death Times Determines the Size and Phenotype of CD8 + T Cell Families

Galectin-9 is an easy to measure biomarker for the interferon signature in systemic lupus erythematosus and antiphospholipid syndrome

Transcriptome network analysis implicates CX3CR1-positive type 3 dendritic cells in non-infectious uveitis

Integration of Immunome With Disease-Gene Network Reveals Common Cellular Mechanisms Between IMIDs and Drug Repurposing Strategies

RegEnrich gene regulator enrichment analysis reveals a key role of the ETS transcription factor family in interferon signaling

Finding Gene Regulatory Networks in Psoriasis: Application of a Tree-Based Machine Learning Approach

microRNA downregulation in plasmacytoid dendritic cells in interferon-positive systemic lupus erythematosus and antiphospholipid syndrome

Unraveling IFN-I response dynamics and TNF crosstalk in the pathophysiology of systemic lupus erythematosus

Characterization of Long Non-Coding RNAs in Systemic Sclerosis Monocytes: A Potential Role for PSMB8-AS1 in Altered Cytokine Secretion

The Transcriptomic Profile of Monocytes from Patients With Sjögren's Syndrome Is Associated With Inflammatory Parameters and Is Mimicked by Circulating Mediators

Compartmentalization and persistence of dominant (regulatory) T cell clones indicates antigen skewing in juvenile idiopathic arthritis

Lymphoid and myeloid immune cell reconstitution after nicotinamide-expanded cord blood transplantation

Plasmacytoid DCs From Patients With Sjögren's Syndrome Are Transcriptionally Primed for Enhanced Pro-inflammatory Cytokine Production

Transcriptome Analysis of CCR9+ T Helper Cells From Primary Sjögren's Syndrome Patients Identifies CCL5 as a Novel Effector Molecule

A Disease-Associated MicroRNA Cluster Links Inflammatory Pathways and an Altered Composition of Leukocyte Subsets to Noninfectious Uveitis

CXCL4 Links Inflammation and Fibrosis by Reprogramming Monocyte-Derived Dendritic Cells in vitro

Characterization of the ferret TRB locus guided by V, D, J, and C gene expression analysis

The memory of a killer T cell: models of CD8+ T cell differentiation

Whole Transcriptome Analysis Reveals Heterogeneity in B Cell Memory Populations in Patients With Juvenile Idiopathic Arthritis-Associated Uveitis

Multi‐omics integration reveals a core network involved in host defence and hyperkeratinization in psoriasis

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