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Cicero Predicts cis-Regulatory DNA Interactions from Single-Cell Chromatin Accessibility Data

Molecular cell, 2018-09, Vol.71 (5), p.858-871.e8

2018

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Single-Cell Multi-omics: An Engine for New Quantitative Models of Gene Regulation

Trends in genetics, 2018-09, Vol.34 (9), p.653-665

2018

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Comprehensive single-cell transcriptional profiling of a multicellular organism

Science (American Association for the Advancement of Science), 2017-08, Vol.357 (6352), p.661-667

2017

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Joint profiling of chromatin accessibility and gene expression in thousands of single cells

Science (American Association for the Advancement of Science), 2018-09, Vol.361 (6409), p.1380-1385

2018

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A lineage-resolved molecular atlas of C. elegans embryogenesis at single-cell resolution

Science (American Association for the Advancement of Science), 2019-09, Vol.365 (6459)

2019

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Embryo-scale, single-cell spatial transcriptomics

Science (American Association for the Advancement of Science), 2021-07, Vol.373 (6550), p.111-117

2021

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A Protein-Truncating HSD17B13 Variant and Protection from Chronic Liver Disease

The New England journal of medicine, 2018-03, Vol.378 (12), p.1096-1106

2018

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3D printed biofunctionalized scaffolds for microfracture repair of cartilage defects

Biomaterials, 2018-12, Vol.185, p.219-231

2018

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Massively multiplex chemical transcriptomics at single-cell resolution

Science (American Association for the Advancement of Science), 2020-01, Vol.367 (6473), p.45-51

2020

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Bone Marrow–Derived Mesenchymal Stem Cells Transduced With Scleraxis Improve Rotator Cuff Healing in a Rat Model

The American journal of sports medicine, 2011-06, Vol.39 (6), p.1282-1289

2011

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Thyroid hormone regulates distinct paths to maturation in pigment cell lineages

eLife, 2019-05, Vol.8

2019

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On the design of CRISPR-based single-cell molecular screens

Nature methods, 2018-04, Vol.15 (4), p.271-274

2018

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Amplified Gliosis and Interferon-Associated Inflammation in the Aging Brain following Diffuse Traumatic Brain Injury

The Journal of neuroscience, 2022-11, Vol.42 (48), p.9082-9096

2022

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Application of Bone Marrow-Derived Mesenchymal Stem Cells in a Rotator Cuff Repair Model

The American journal of sports medicine, 2009-11, Vol.37 (11), p.2126-2133

2009

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Biomechanical Aspects of Osteochondral Regeneration: Implications and Strategies for Three-Dimensional Bioprinting

Tissue engineering. Part B, Reviews, 2022-08, Vol.28 (4), p.766-788

2022

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Enhanced fear memory after social defeat in mice is dependent on interleukin-1 receptor signaling in glutamatergic neurons

Molecular psychiatry, 2024-08, Vol.29 (8), p.2321-2334

2024

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Impaired cortical neuronal homeostasis and cognition after diffuse traumatic brain injury are dependent on microglia and type I interferon responses

Glia, 2024-02, Vol.72 (2), p.300-321

2024

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How Should We Secure Our Transplanted Meniscus? A Meta-analysis

The American journal of sports medicine, 2018-07, Vol.46 (9), p.2285-2290

2018

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Strategies for the Co-Delivery of Osteoclasts and MSCs in 3D-Printable Osteochondral Scaffolds

Tissue engineering. Part C, Methods, 2024-07

2024

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Outcomes of Anterior Cruciate Ligament Reconstruction in Obese and Overweight Patients: A Systematic Review

Clinical journal of sport medicine, 2019-07, Vol.29 (4), p.257-261

2019

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Computational investigation of interface printing patterns within 3D printed multilayered scaffolds for osteochondral tissue engineering

Biofabrication, 2022-02, Vol.14 (2), p.25015

2022

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Outcomes of Anterior Cruciate Ligament Reconstruction in Obese and Overweight Patients: A Systematic Review

Clinical journal of sport medicine, 2019-07, Vol.29 (4), p.257

2019

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CLAMMS: a scalable algorithm for calling common and rare copy number variants from exome sequencing data

Bioinformatics, 2016-01, Vol.32 (1), p.133-135

2016

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Functional Outcomes and Patient Satisfaction After Fasciotomy for Chronic Exertional Compartment Syndrome

The American journal of sports medicine, 2013-02, Vol.41 (2), p.430-436

2013

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Designing Biomimetic 3D-Printed Osteochondral Scaffolds for Enhanced Load-Bearing Capacity

Tissue engineering. Part A, 2024-07, Vol.30 (13-14), p.409-420

2024

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Cicero Predicts cis-Regulatory DNA Interactions from Single-Cell Chromatin Accessibility Data

Single-Cell Multi-omics: An Engine for New Quantitative Models of Gene Regulation

Comprehensive single-cell transcriptional profiling of a multicellular organism

Joint profiling of chromatin accessibility and gene expression in thousands of single cells

A lineage-resolved molecular atlas of C. elegans embryogenesis at single-cell resolution

Embryo-scale, single-cell spatial transcriptomics

A Protein-Truncating HSD17B13 Variant and Protection from Chronic Liver Disease

3D printed biofunctionalized scaffolds for microfracture repair of cartilage defects

Massively multiplex chemical transcriptomics at single-cell resolution

Bone Marrow–Derived Mesenchymal Stem Cells Transduced With Scleraxis Improve Rotator Cuff Healing in a Rat Model

Thyroid hormone regulates distinct paths to maturation in pigment cell lineages

On the design of CRISPR-based single-cell molecular screens

Amplified Gliosis and Interferon-Associated Inflammation in the Aging Brain following Diffuse Traumatic Brain Injury

Application of Bone Marrow-Derived Mesenchymal Stem Cells in a Rotator Cuff Repair Model

Biomechanical Aspects of Osteochondral Regeneration: Implications and Strategies for Three-Dimensional Bioprinting

Enhanced fear memory after social defeat in mice is dependent on interleukin-1 receptor signaling in glutamatergic neurons

Impaired cortical neuronal homeostasis and cognition after diffuse traumatic brain injury are dependent on microglia and type I interferon responses

How Should We Secure Our Transplanted Meniscus? A Meta-analysis

Strategies for the Co-Delivery of Osteoclasts and MSCs in 3D-Printable Osteochondral Scaffolds

Outcomes of Anterior Cruciate Ligament Reconstruction in Obese and Overweight Patients: A Systematic Review

Computational investigation of interface printing patterns within 3D printed multilayered scaffolds for osteochondral tissue engineering

Outcomes of Anterior Cruciate Ligament Reconstruction in Obese and Overweight Patients: A Systematic Review

CLAMMS: a scalable algorithm for calling common and rare copy number variants from exome sequencing data

Functional Outcomes and Patient Satisfaction After Fasciotomy for Chronic Exertional Compartment Syndrome

Designing Biomimetic 3D-Printed Osteochondral Scaffolds for Enhanced Load-Bearing Capacity

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