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Transforming clinical microbiology with bacterial genome sequencing

Nature reviews. Genetics, 2012-09, Vol.13 (9), p.601

2012

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Impact of vaccination on new SARS-CoV-2 infections in the United Kingdom

Nature medicine, 2021-08, Vol.27 (8), p.1370-1378

2021

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Anti-spike antibody response to natural SARS-CoV-2 infection in the general population

Nature communications, 2021-10, Vol.12 (1), p.6250-6250, Article 6250

2021

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Diverse Sources of C. difficile Infection Identified on Whole-Genome Sequencing

The New England journal of medicine, 2013-09, Vol.369 (13), p.1195-1205

2013

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Antibody responses to SARS-CoV-2 vaccines in 45,965 adults from the general population of the United Kingdom

Nature microbiology, 2021-09, Vol.6 (9), p.1140

2021

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Relationship Between Bacterial Strain Type, Host Biomarkers, and Mortality in Clostridium difficile Infection

Clinical infectious diseases, 2013-06, Vol.56 (11), p.1589-1600

2013

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Asymptomatic Clostridium difficile colonisation and onward transmission

PloS one, 2013-11, Vol.8 (11), p.e78445

2013

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Covert dissemination of carbapenemase-producing Klebsiella pneumoniae (KPC) in a successfully controlled outbreak: long- and short-read whole-genome sequencing demonstrate multiple genetic modes of transmission

Journal of antimicrobial chemotherapy, 2017-11, Vol.72 (11), p.3025-3034

2017

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Effect of Covid-19 Vaccination on Transmission of Alpha and Delta Variants

The New England journal of medicine, 2022-02, Vol.386 (8), p.744-756

2022

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The quality of vital signs measurements and value preferences in electronic medical records varies by hospital, specialty, and patient demographics

Scientific reports, 2023-03, Vol.13 (1), p.3858-3858, Article 3858

2023

Volltextzugriff (PDF)

Selective culture enrichment and sequencing of feces to enhance detection of antimicrobial resistance genes in third-generation cephalosporin resistant Enterobacteriaceae

PloS one, 2019-11, Vol.14 (11), p.e0222831-e0222831

2019

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Characterisation of Clostridium difficile hospital ward-based transmission using extensive epidemiological data and molecular typing

PLoS medicine, 2012-02, Vol.9 (2), p.e1001172

2012

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Effect of Delta variant on viral burden and vaccine effectiveness against new SARS-CoV-2 infections in the UK

Nature medicine, 2021-12, Vol.27 (12), p.2127-2135

2021

Volltextzugriff (PDF)

'Caveat emptor': the cautionary tale of endocarditis and the potential pitfalls of clinical coding data-an electronic health records study

BMC medicine, 2019-09, Vol.17 (1), p.169-169, Article 169

2019

Volltextzugriff (PDF)

Using hospital network-based surveillance for antimicrobial resistance as a more robust alternative to self-reporting

PloS one, 2019-07, Vol.14 (7), p.e0219994-e0219994

2019

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Antimicrobial resistance in commensal opportunistic pathogens isolated from non-sterile sites can be an effective proxy for surveillance in bloodstream infections

Scientific reports, 2021-12, Vol.11 (1), p.23359-23359, Article 23359

2021

Volltextzugriff (PDF)

A Candida auris Outbreak and Its Control in an Intensive Care Setting

The New England journal of medicine, 2018-10, Vol.379 (14), p.1322-1331

2018

Volltextzugriff (PDF)

Same-Day Diagnostic and Surveillance Data for Tuberculosis via Whole-Genome Sequencing of Direct Respiratory Samples

Journal of clinical microbiology, 2017-05, Vol.55 (5), p.1285-1298

2017

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A modified RNA-Seq approach for whole genome sequencing of RNA viruses from faecal and blood samples

PloS one, 2013-06, Vol.8 (6), p.e66129-e66129

2013

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Clostridium difficile Mixed Infection and Reinfection

Journal of Clinical Microbiology, 2012-01, Vol.50 (1), p.142-144

2012

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Rapid antibiotic-resistance predictions from genome sequence data for Staphylococcus aureus and Mycobacterium tuberculosis

Nature communications, 2015-12, Vol.6 (1), p.10063-10063, Article 10063

2015

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WGS to predict antibiotic MICs for Neisseria gonorrhoeae

Journal of antimicrobial chemotherapy, 2017-07, Vol.72 (7), p.1937-1947

2017

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Whole-genome sequencing to determine transmission of Neisseria gonorrhoeae : an observational study

The Lancet infectious diseases, 2016-11, Vol.16 (11), p.1295-1303

2016

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Transforming clinical microbiology with bacterial genome sequencing

Impact of vaccination on new SARS-CoV-2 infections in the United Kingdom

Anti-spike antibody response to natural SARS-CoV-2 infection in the general population

Diverse Sources of C. difficile Infection Identified on Whole-Genome Sequencing

Antibody responses to SARS-CoV-2 vaccines in 45,965 adults from the general population of the United Kingdom

Relationship Between Bacterial Strain Type, Host Biomarkers, and Mortality in Clostridium difficile Infection

Asymptomatic Clostridium difficile colonisation and onward transmission

Epidemiology of Clostridium difficile in infants in Oxfordshire, UK: Risk factors for colonization and carriage, and genetic overlap with regional C. difficile infection strains

Covert dissemination of carbapenemase-producing Klebsiella pneumoniae (KPC) in a successfully controlled outbreak: long- and short-read whole-genome sequencing demonstrate multiple genetic modes of transmission

Effect of Covid-19 Vaccination on Transmission of Alpha and Delta Variants

The quality of vital signs measurements and value preferences in electronic medical records varies by hospital, specialty, and patient demographics

Selective culture enrichment and sequencing of feces to enhance detection of antimicrobial resistance genes in third-generation cephalosporin resistant Enterobacteriaceae

Characterisation of Clostridium difficile hospital ward-based transmission using extensive epidemiological data and molecular typing

Effect of Delta variant on viral burden and vaccine effectiveness against new SARS-CoV-2 infections in the UK

'Caveat emptor': the cautionary tale of endocarditis and the potential pitfalls of clinical coding data-an electronic health records study

Using hospital network-based surveillance for antimicrobial resistance as a more robust alternative to self-reporting

Antimicrobial resistance in commensal opportunistic pathogens isolated from non-sterile sites can be an effective proxy for surveillance in bloodstream infections

A Candida auris Outbreak and Its Control in an Intensive Care Setting

Same-Day Diagnostic and Surveillance Data for Tuberculosis via Whole-Genome Sequencing of Direct Respiratory Samples

A modified RNA-Seq approach for whole genome sequencing of RNA viruses from faecal and blood samples

Clostridium difficile Mixed Infection and Reinfection

Rapid antibiotic-resistance predictions from genome sequence data for Staphylococcus aureus and Mycobacterium tuberculosis

Whole-genome sequencing for prediction of Mycobacterium tuberculosis drug susceptibility and resistance: a retrospective cohort study

WGS to predict antibiotic MICs for Neisseria gonorrhoeae

Whole-genome sequencing to determine transmission of Neisseria gonorrhoeae : an observational study

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