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MADE4: an R package for multivariate analysis of gene expression data

Bioinformatics, 2005-06, Vol.21 (11), p.2789-2790

2005

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Repeated horizontal gene transfers triggered parallel evolution of magnetotaxis in two evolutionary divergent lineages of magnetotactic bacteria

The ISME Journal, 2020-07, Vol.14 (7), p.1783-1794

2020

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From conservation to structure, studies of magnetosome associated cation diffusion facilitators (CDF) proteins in Proteobacteria

PloS one, 2020-04, Vol.15 (4), p.e0231839-e0231839

2020

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leBIBIQBPP: a set of databases and a webtool for automatic phylogenetic analysis of prokaryotic sequences

BMC bioinformatics, 2015-08, Vol.16 (1), p.251-251, Article 251

2015

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Exploring Protein Space: From Hydrolase to Ligase by Substitution

Molecular biology and evolution, 2021-03, Vol.38 (3), p.761-776

2021

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The European ribosomal RNA database

Nucleic acids research, 2004-01, Vol.32 (Database issue), p.D101-103

2004

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Use and misuse of correspondence analysis in codon usage studies

Nucleic acids research, 2002-10, Vol.30 (20), p.4548-4555

2002

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Tree pattern matching in phylogenetic trees: automatic search for orthologs or paralogs in homologous gene sequence databases

Bioinformatics, 2005-06, Vol.21 (11), p.2596-2603

2005

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Experimental analysis of diverse actin-like proteins from various magnetotactic bacteria by functional expression in Magnetospirillum gryphiswaldense

mBio, 2023-10, Vol.14 (5), p.e0164923-e0164923

2023

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Genomic study of a novel magnetotactic Alphaproteobacteria uncovers the multiple ancestry of magnetotaxis

Environmental microbiology, 2018-12, Vol.20 (12), p.4415-4430

2018

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IsoSel: Protein Isoform Selector for phylogenetic reconstructions

PloS one, 2017-03, Vol.12 (3), p.e0174250-e0174250

2017

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Phylogenetic analysis of polyketide synthase I domains from soil metagenomic libraries allows selection of promising clones

Applied and Environmental Microbiology, 2004-09, Vol.70 (9), p.5522-5527

2004

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Evolutionary history of phosphatidylinositol- 3-kinases: ancestral origin in eukaryotes and complex duplication patterns

BMC evolutionary biology, 2015-10, Vol.15 (1), p.226, Article 226

2015

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Integrated databanks access and sequence/structure analysis services at the PBIL

Nucleic acids research, 2003-07, Vol.31 (13), p.3393-3399

2003

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Between-group analysis of microarray data

Bioinformatics, 2002-12, Vol.18 (12), p.1600-1608

2002

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Origin and molecular evolution of receptor tyrosine kinases with immunoglobulin-like domains

Molecular biology and evolution, 2006-06, Vol.23 (6), p.1232-1241

2006

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A phylogenomic approach to bacterial phylogeny: evidence of a core of genes sharing a common history

Genome research, 2002-07, Vol.12 (7), p.1080-1090

2002

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ISMB/ECCB 2023 organization benefited from the strengths of the French bioinformatics community

Bioinformatics advances, 2024, Vol.4 (1), p.vbae040-vbae040

2024

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TPMS: a set of utilities for querying collections of gene trees

BMC bioinformatics, 2013-03, Vol.14 (1), p.109-109, Article 109

2013

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Databases of homologous gene families for comparative genomics

BMC bioinformatics, 2009-06, Vol.10 Suppl 6 (S6), p.S3-S3, Article S3

2009

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Cross-platform comparison and visualisation of gene expression data using co-inertia analysis

BMC bioinformatics, 2003-11, Vol.4 (1), p.59-59, Article 59

2003

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The source of laterally transferred genes in bacterial genomes

Genome Biology, 2003-01, Vol.4 (9), p.R57-R57, Article R57

2003

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Molecular and functional evolution of the fungal diterpene synthase genes

BMC microbiology, 2015-10, Vol.15 (1), p.221-221, Article 221

2015

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Horizontal gene transfer regulation in bacteria as a "spandrel" of DNA repair mechanisms

PloS one, 2007-10, Vol.2 (10), p.e1055-e1055

2007

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Optimized between-group classification: a new jackknife-based gene selection procedure for genome-wide expression data

BMC bioinformatics, 2005-09, Vol.6 (1), p.239-239

2005

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MADE4: an R package for multivariate analysis of gene expression data

Repeated horizontal gene transfers triggered parallel evolution of magnetotaxis in two evolutionary divergent lineages of magnetotactic bacteria

From conservation to structure, studies of magnetosome associated cation diffusion facilitators (CDF) proteins in Proteobacteria

leBIBIQBPP: a set of databases and a webtool for automatic phylogenetic analysis of prokaryotic sequences

Exploring Protein Space: From Hydrolase to Ligase by Substitution

The European ribosomal RNA database

Use and misuse of correspondence analysis in codon usage studies

Tree pattern matching in phylogenetic trees: automatic search for orthologs or paralogs in homologous gene sequence databases

Experimental analysis of diverse actin-like proteins from various magnetotactic bacteria by functional expression in Magnetospirillum gryphiswaldense

Genomic study of a novel magnetotactic Alphaproteobacteria uncovers the multiple ancestry of magnetotaxis

IsoSel: Protein Isoform Selector for phylogenetic reconstructions

Phylogenetic analysis of polyketide synthase I domains from soil metagenomic libraries allows selection of promising clones

Evolutionary history of phosphatidylinositol- 3-kinases: ancestral origin in eukaryotes and complex duplication patterns

Integrated databanks access and sequence/structure analysis services at the PBIL

Between-group analysis of microarray data

Origin and molecular evolution of receptor tyrosine kinases with immunoglobulin-like domains

A phylogenomic approach to bacterial phylogeny: evidence of a core of genes sharing a common history

ISMB/ECCB 2023 organization benefited from the strengths of the French bioinformatics community

TPMS: a set of utilities for querying collections of gene trees

Databases of homologous gene families for comparative genomics

Cross-platform comparison and visualisation of gene expression data using co-inertia analysis

The source of laterally transferred genes in bacterial genomes

Molecular and functional evolution of the fungal diterpene synthase genes

Horizontal gene transfer regulation in bacteria as a "spandrel" of DNA repair mechanisms

Optimized between-group classification: a new jackknife-based gene selection procedure for genome-wide expression data

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