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Systematic evaluation of chromosome conformation capture assays

Nature methods, 2021-09, Vol.18 (9), p.1046

2021

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A chromosome folding intermediate at the condensin-to-cohesin transition during telophase

Nature cell biology, 2019-11, Vol.21 (11), p.1393

2019

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The HoxD cluster is a dynamic and resilient TAD boundary controlling the segregation of antagonistic regulatory landscapes

Genes & development, 2017-11, Vol.31 (22), p.2264-2281

2017

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Transcriptional Silencers in Drosophila Serve a Dual Role as Transcriptional Enhancers in Alternate Cellular Contexts

Molecular cell, 2020-01, Vol.77 (2), p.324-337.e8

2020

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Measuring the reproducibility and quality of Hi-C data

Genome Biology, 2019-03, Vol.20 (1), p.57-57, Article 57

2019

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The non-canonical SMC protein SmcHD1 antagonises TAD formation and compartmentalisation on the inactive X chromosome

Nature communications, 2019-01, Vol.10 (1), p.30-14, Article 30

2019

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Large domains of heterochromatin direct the formation of short mitotic chromosome loops

eLife, 2020-09, Vol.9

2020

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Polycyclic codes over Galois rings with applications to repeated-root constacyclic codes

Finite fields and their applications, 2013-01, Vol.19 (1), p.16-38

2013

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RiboGraph: an interactive visualization system for ribosome profiling data at read length resolution

Bioinformatics (Oxford, England), 2024-06, Vol.40 (6)

2024

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RiboFlow, RiboR and RiboPy: an ecosystem for analyzing ribosome profiling data at read length resolution

Bioinformatics, 2020-05, Vol.36 (9), p.2929-2931

2020

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Expanded encyclopaedias of DNA elements in the human and mouse genomes

Nature (London), 2020-07, Vol.583 (7818), p.699-710

2020

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Single-cell quantification of ribosome occupancy in early mouse development

Nature (London), 2023-06, Vol.618 (7967), p.1057-1064

2023

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Genes with 5' terminal oligopyrimidine tracts preferentially escape global suppression of translation by the SARS-CoV-2 Nsp1 protein

RNA (Cambridge), 2021-09, Vol.27 (9), p.1025-1045

2021

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The 4D nucleome project

Nature (London), 2017-09, Vol.549 (7671), p.219-226

2017

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Higher-Order Organization Principles of Pre-translational mRNPs

Molecular cell, 2018-11, Vol.72 (4), p.715-726.e3

2018

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Perspectives on ENCODE

Nature (London), 2020-07, Vol.583 (7818), p.693-698

2020

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Loss of coordinated expression between ribosomal and mitochondrial genes revealed by comprehensive characterization of a large family with a rare Mendelian disorder

Genomics (San Diego, Calif.), 2021-07, Vol.113 (4), p.1895-1905

2021

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Transcriptome-wide Interrogation of the Functional Intronome by Spliceosome Profiling

Cell, 2018-05, Vol.173 (4), p.1031-1044.e13

2018

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An optimized kit-free method for making strand-specific deep sequencing libraries from RNA fragments

Nucleic acids research, 2015-01, Vol.43 (1), p.e2

2015

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Author Correction: Expanded encyclopaedias of DNA elements in the human and mouse genomes

Nature (London), 2022-05, Vol.605 (7909), p.E3-E3

2022

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Author Correction: Perspectives on ENCODE

Nature (London), 2022-05, Vol.605 (7909), p.E4-E4

2022

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On a class of repeated-root monomial-like abelian codes

Journal of algebra combinatorics discrete structures and applications, 2015-04, Vol.2 (2)

2015

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ASPeak: an abundance sensitive peak detection algorithm for RIP-Seq

Bioinformatics, 2013-10, Vol.29 (19), p.2485-2486

2013

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The Minimum Hamming Distance of Cyclic Codes of Length 2ps

Applied Algebra, Algebraic Algorithms and Error-Correcting Codes, p.92-100

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Systematic evaluation of chromosome conformation capture assays

A chromosome folding intermediate at the condensin-to-cohesin transition during telophase

The HoxD cluster is a dynamic and resilient TAD boundary controlling the segregation of antagonistic regulatory landscapes

Transcriptional Silencers in Drosophila Serve a Dual Role as Transcriptional Enhancers in Alternate Cellular Contexts

Measuring the reproducibility and quality of Hi-C data

The non-canonical SMC protein SmcHD1 antagonises TAD formation and compartmentalisation on the inactive X chromosome

Large domains of heterochromatin direct the formation of short mitotic chromosome loops

Polycyclic codes over Galois rings with applications to repeated-root constacyclic codes

RiboGraph: an interactive visualization system for ribosome profiling data at read length resolution

RiboFlow, RiboR and RiboPy: an ecosystem for analyzing ribosome profiling data at read length resolution

Expanded encyclopaedias of DNA elements in the human and mouse genomes

Single-cell quantification of ribosome occupancy in early mouse development

Genes with 5' terminal oligopyrimidine tracts preferentially escape global suppression of translation by the SARS-CoV-2 Nsp1 protein

The 4D nucleome project

Higher-Order Organization Principles of Pre-translational mRNPs

Integrative detection and analysis of structural variation in cancer genomes

Perspectives on ENCODE

Loss of coordinated expression between ribosomal and mitochondrial genes revealed by comprehensive characterization of a large family with a rare Mendelian disorder

Transcriptome-wide Interrogation of the Functional Intronome by Spliceosome Profiling

An optimized kit-free method for making strand-specific deep sequencing libraries from RNA fragments

Author Correction: Expanded encyclopaedias of DNA elements in the human and mouse genomes

Author Correction: Perspectives on ENCODE

On a class of repeated-root monomial-like abelian codes

ASPeak: an abundance sensitive peak detection algorithm for RIP-Seq

The Minimum Hamming Distance of Cyclic Codes of Length 2ps

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