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ICEberg 2.0: an updated database of bacterial integrative and conjugative elements

Nucleic acids research, 2019-01, Vol.47 (D1), p.D660-D665

2019

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oriTfinder: a web-based tool for the identification of origin of transfers in DNA sequences of bacterial mobile genetic elements

Nucleic acids research, 2018-07, Vol.46 (W1), p.W229-W234

2018

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VRprofile: gene-cluster-detection-based profiling of virulence and antibiotic resistance traits encoded within genome sequences of pathogenic bacteria

Briefings in bioinformatics, 2018-07, Vol.19 (4), p.566-574

2018

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TADB 2.0: an updated database of bacterial type II toxin-antitoxin loci

Nucleic acids research, 2018-01, Vol.46 (D1), p.D749-D753

2018

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SecReT6: a web-based resource for type VI secretion systems found in bacteria

Environmental microbiology, 2015-07, Vol.17 (7), p.2196-2202

2015

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Mobilization of the nonconjugative virulence plasmid from hypervirulent Klebsiella pneumoniae

Genome medicine, 2021-07, Vol.13 (1), p.119-119, Article 119

2021

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Type VI secretion system contributes to Enterohemorrhagic Escherichia coli virulence by secreting catalase against host reactive oxygen species (ROS)

PLoS pathogens, 2017-03, Vol.13 (3), p.e1006246-e1006246

2017

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Identification and characterization of acetyltransferase‐type toxin‐antitoxin locus in Klebsiella pneumoniae

Molecular microbiology, 2018-05, Vol.108 (4), p.336-349

2018

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T4SEfinder: a bioinformatics tool for genome-scale prediction of bacterial type IV secreted effectors using pre-trained protein language model

Briefings in bioinformatics, 2022-01, Vol.23 (1)

2022

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Complete Genome Sequence of Klebsiella pneumoniae subsp. pneumoniae HS11286, a Multidrug-Resistant Strain Isolated from Human Sputum

Journal of Bacteriology, 2012-04, Vol.194 (7), p.1841-1842

2012

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Genetic diversity and evolution of the virulence plasmids encoding aerobactin and salmochelin in Klebsiella pneumoniae

Virulence, 2021-12, Vol.12 (1), p.1323-1333

2021

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DEG: a database of essential genes

Nucleic acids research, 2004-01, Vol.32 (Database issue), p.D271-272

2004

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Mobilizable plasmids drive the spread of antimicrobial resistance genes and virulence genes in Klebsiella pneumoniae

Genome medicine, 2023-12, Vol.15 (1), p.1-14, Article 106

2023

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TADB: a web-based resource for Type 2 toxin-antitoxin loci in bacteria and archaea

Nucleic acids research, 2011-01, Vol.39 (Database issue), p.D606-D611

2011

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ICEberg: a web-based resource for integrative and conjugative elements found in Bacteria

Nucleic acids research, 2012-01, Vol.40 (Database issue), p.D621-D626

2012

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Large-Scale Identification of AbaR-Type Genomic Islands in Acinetobacter baumannii Reveals Diverse Insertion Sites and Clonal Lineage-Specific Antimicrobial Resistance Gene Profiles

Antimicrobial agents and chemotherapy, 2019-04, Vol.63 (4)

2019

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SecReT6 update: a comprehensive resource of bacterial Type VI Secretion Systems

Science China. Life sciences, 2023-03, Vol.66 (3), p.626-634

2023

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SecReT4: a web-based bacterial type IV secretion system resource

Nucleic acids research, 2013-01, Vol.41 (Database issue), p.D660-D665

2013

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Complete genome sequence of hypervirulent and outbreak-associated Acinetobacter baumannii strain LAC-4: epidemiology, resistance genetic determinants and potential virulence factors

Scientific reports, 2015-03, Vol.5 (1), p.8643-8643, Article 8643

2015

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Toxin-antitoxin operon kacAT of Klebsiella pneumoniae is regulated by conditional cooperativity via a W-shaped KacA-KacT complex

Nucleic acids research, 2019-08, Vol.47 (14), p.7690-7702

2019

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Identification and Characterization of an Antibacterial Type VI Secretion System in the Carbapenem-Resistant Strain Klebsiella pneumoniae HS11286

Frontiers in cellular and infection microbiology, 2017-10, Vol.7, p.442-442

2017

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Role and Regulation of Fatty Acid Biosynthesis in the Response of Shewanella piezotolerans WP3 to Different Temperatures and Pressures

Journal of Bacteriology, 2009-04, Vol.191 (8), p.2574-2584

2009

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ThioFinder: a web-based tool for the identification of thiopeptide gene clusters in DNA sequences

PloS one, 2012-09, Vol.7 (9), p.e45878-e45878

2012

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Identification of Type II Toxin-Antitoxin Loci in Levilactobacillus brevis

Interdisciplinary sciences : computational life sciences, 2022-03, Vol.14 (1), p.80-88

2022

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VRprofile2: detection of antibiotic resistance-associated mobilome in bacterial pathogens

Nucleic acids research, 2022-07, Vol.50 (W1), p.W768-W773

2022

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ICEberg 2.0: an updated database of bacterial integrative and conjugative elements

oriTfinder: a web-based tool for the identification of origin of transfers in DNA sequences of bacterial mobile genetic elements

VRprofile: gene-cluster-detection-based profiling of virulence and antibiotic resistance traits encoded within genome sequences of pathogenic bacteria

TADB 2.0: an updated database of bacterial type II toxin-antitoxin loci

SecReT6: a web-based resource for type VI secretion systems found in bacteria

Mobilization of the nonconjugative virulence plasmid from hypervirulent Klebsiella pneumoniae

Type VI secretion system contributes to Enterohemorrhagic Escherichia coli virulence by secreting catalase against host reactive oxygen species (ROS)

Identification and characterization of acetyltransferase‐type toxin‐antitoxin locus in Klebsiella pneumoniae

T4SEfinder: a bioinformatics tool for genome-scale prediction of bacterial type IV secreted effectors using pre-trained protein language model

Complete Genome Sequence of Klebsiella pneumoniae subsp. pneumoniae HS11286, a Multidrug-Resistant Strain Isolated from Human Sputum

Genetic diversity and evolution of the virulence plasmids encoding aerobactin and salmochelin in Klebsiella pneumoniae

DEG: a database of essential genes

Mobilizable plasmids drive the spread of antimicrobial resistance genes and virulence genes in Klebsiella pneumoniae

TADB: a web-based resource for Type 2 toxin-antitoxin loci in bacteria and archaea

ICEberg: a web-based resource for integrative and conjugative elements found in Bacteria

Large-Scale Identification of AbaR-Type Genomic Islands in Acinetobacter baumannii Reveals Diverse Insertion Sites and Clonal Lineage-Specific Antimicrobial Resistance Gene Profiles

SecReT6 update: a comprehensive resource of bacterial Type VI Secretion Systems

SecReT4: a web-based bacterial type IV secretion system resource

Complete genome sequence of hypervirulent and outbreak-associated Acinetobacter baumannii strain LAC-4: epidemiology, resistance genetic determinants and potential virulence factors

Toxin-antitoxin operon kacAT of Klebsiella pneumoniae is regulated by conditional cooperativity via a W-shaped KacA-KacT complex

Identification and Characterization of an Antibacterial Type VI Secretion System in the Carbapenem-Resistant Strain Klebsiella pneumoniae HS11286

Role and Regulation of Fatty Acid Biosynthesis in the Response of Shewanella piezotolerans WP3 to Different Temperatures and Pressures

ThioFinder: a web-based tool for the identification of thiopeptide gene clusters in DNA sequences

Identification of Type II Toxin-Antitoxin Loci in Levilactobacillus brevis

VRprofile2: detection of antibiotic resistance-associated mobilome in bacterial pathogens

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