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Ten simple rules for attending your first conference

PLoS computational biology, 2021-07, Vol.17 (7), p.e1009133-e1009133

2021

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A Dynamic Range Compression and Three-Dimensional Peptide Fractionation Analysis Platform Expands Proteome Coverage and the Diagnostic Potential of Whole Saliva

Journal of proteome research, 2009-12, Vol.8 (12), p.5590-5600

2009

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Using Galaxy-P to leverage RNA-Seq for the discovery of novel protein variations

BMC genomics, 2014-08, Vol.15 (1), p.703-703, Article 703

2014

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An Accessible Proteogenomics Informatics Resource for Cancer Researchers

Cancer research (Chicago, Ill.), 2017-11, Vol.77 (21), p.e43-e46

2017

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CNV-RF Is a Random Forest–Based Copy Number Variation Detection Method Using Next-Generation Sequencing

The Journal of molecular diagnostics : JMD, 2016-11, Vol.18 (6), p.872-881

2016

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Next generation sequencing for clinical diagnostics: Five year experience of an academic laboratory

Molecular genetics and metabolism reports, 2019-06, Vol.19, p.100464-100464, Article 100464

2019

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Quantitative proteomics reveals myosin and actin as promising saliva biomarkers for distinguishing pre-malignant and malignant oral lesions

PloS one, 2010-06, Vol.5 (6), p.e11148-e11148

2010

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Proteomics Analysis of Cells in Whole Saliva from Oral Cancer Patients via Value-added Three-dimensional Peptide Fractionation and Tandem Mass Spectrometry

Molecular & cellular proteomics, 2008-03, Vol.7 (3), p.486-498

2008

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Augmenting Chinese hamster genome assembly by identifying regions of high confidence

Biotechnology journal, 2016-09, Vol.11 (9), p.1151-1157

2016

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ITALLIC: A tool for identifying and correcting errors in location based plant breeding data

Computers and electronics in agriculture, 2022-06, Vol.197, p.106947, Article 106947

2022

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Flexible and Accessible Workflows for Improved Proteogenomic Analysis Using the Galaxy Framework

Journal of proteome research, 2014-12, Vol.13 (12), p.5898-5908

2014

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CLIA-certified next-generation sequencing analysis in the cloud

BMC proceedings, 2012-10, Vol.6 (S6), p.P54-P54, Article P54

2012

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Data exploration tools for the Gene Ontology database

Bioinformatics, 2004-12, Vol.20 (18), p.3442-3454

2004

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RAS internal tandem duplication disrupts GTPase-activating protein (GAP) binding to activate oncogenic signaling

The Journal of biological chemistry, 2020-07, Vol.295 (28), p.9335-9348

2020

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Decentralized agent-based underfrequency load shedding

Integrated computer-aided engineering, 2010-01, Vol.17 (4), p.321-329

2010

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Clinical validation of targeted next-generation sequencing for inherited disorders

Archives of pathology & laboratory medicine (1976), 2015-02, Vol.139 (2), p.204-210

2015

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28: Copy Number Variation Detection Using Next-Generation Sequencing

American journal of clinical pathology, 2015-05, Vol.143 (suppl_1), p.A013-A013

2015

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Implementation of Cloud based next generation sequencing data analysis in a clinical laboratory

BMC research notes, 2014-05, Vol.7 (1), p.314-314, Article 314

2014

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LTQ-iQuant: A freely available software pipeline for automated and accurate protein quantification of isobaric tagged peptide data from LTQ instruments

Proteomics (Weinheim), 2010-10, Vol.10 (19), p.3533-3538

2010

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Novel In Situ Collection of Tumor Interstitial Fluid from a Head and Neck Squamous Carcinoma Reveals a Unique Proteome with Diagnostic Potential

Clinical proteomics, 2010-09, Vol.6 (3), p.75-82

2010

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Hadoop-CNV-RF: A Scalable Copy Number Variation Detection Tool for Next-Generation Sequencing Data

Proceedings of the 11th ACM International Conference on Bioinformatics, Computational Biology and Health Informatics, 2020, p.1-8

2020

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Identifying Candidate Salivary Oral Cancer Biomarkers: Accurate protein quantification and analysis on LTQ type mass spectrometers

Onsongo, Getiria Innocent

2011

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Generating GO Slim Using Relational Database Management Systems to Support Proteomics Analysis

2008 21st IEEE International Symposium on Computer-Based Medical Systems, 2008, p.215-217

2008

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A Platform for Computationally Advanced Collaborative AgroInformatics Data Discovery and Analysis

Practice and Experience in Advanced Research Computing 2017: Sustainability, Success and Impact, 2017, p.1-4

2017

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Relational operators for prioritizing candidate biomarkers in high-throughput differential expression data

Proceedings of the First ACM International Conference on Bioinformatics and Computational Biology, 2010, p.25-34

2010

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Ten simple rules for attending your first conference

A Dynamic Range Compression and Three-Dimensional Peptide Fractionation Analysis Platform Expands Proteome Coverage and the Diagnostic Potential of Whole Saliva

Using Galaxy-P to leverage RNA-Seq for the discovery of novel protein variations

An Accessible Proteogenomics Informatics Resource for Cancer Researchers

CNV-RF Is a Random Forest–Based Copy Number Variation Detection Method Using Next-Generation Sequencing

Next generation sequencing for clinical diagnostics: Five year experience of an academic laboratory

Quantitative proteomics reveals myosin and actin as promising saliva biomarkers for distinguishing pre-malignant and malignant oral lesions

Proteomics Analysis of Cells in Whole Saliva from Oral Cancer Patients via Value-added Three-dimensional Peptide Fractionation and Tandem Mass Spectrometry

Augmenting Chinese hamster genome assembly by identifying regions of high confidence

ITALLIC: A tool for identifying and correcting errors in location based plant breeding data

Flexible and Accessible Workflows for Improved Proteogenomic Analysis Using the Galaxy Framework

CLIA-certified next-generation sequencing analysis in the cloud

Data exploration tools for the Gene Ontology database

RAS internal tandem duplication disrupts GTPase-activating protein (GAP) binding to activate oncogenic signaling

Decentralized agent-based underfrequency load shedding

Clinical validation of targeted next-generation sequencing for inherited disorders

28: Copy Number Variation Detection Using Next-Generation Sequencing

Implementation of Cloud based next generation sequencing data analysis in a clinical laboratory

LTQ-iQuant: A freely available software pipeline for automated and accurate protein quantification of isobaric tagged peptide data from LTQ instruments

Novel In Situ Collection of Tumor Interstitial Fluid from a Head and Neck Squamous Carcinoma Reveals a Unique Proteome with Diagnostic Potential

Hadoop-CNV-RF: A Scalable Copy Number Variation Detection Tool for Next-Generation Sequencing Data

Identifying Candidate Salivary Oral Cancer Biomarkers: Accurate protein quantification and analysis on LTQ type mass spectrometers

Generating GO Slim Using Relational Database Management Systems to Support Proteomics Analysis

A Platform for Computationally Advanced Collaborative AgroInformatics Data Discovery and Analysis

Relational operators for prioritizing candidate biomarkers in high-throughput differential expression data

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