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Interpretation of omics data analyses

Journal of human genetics, 2021-01, Vol.66 (1), p.93-102

2021

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Data-driven detection of age-related arbitrary monotonic changes in single-cell gene expression distributions

PeerJ (San Francisco, CA), 2024-02, Vol.12, p.e16851-e16851, Article e16851

2024

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Data-driven comparison of multiple high-dimensional single-cell expression profiles

Journal of human genetics, 2022-04, Vol.67 (4), p.215-221

2022

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Decomposition of a set of distributions in extended exponential family form for distinguishing multiple oligo-dimensional marker expression profiles of single-cell populations and visualizing their dynamics

PloS one, 2020-04, Vol.15 (4), p.e0231250-e0231250

2020

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Application of a mathematical model to clarify the statistical characteristics of a pan-tissue DNA methylation clock

GeroScience, 2024-04, Vol.46 (2), p.2001-2015

Okada, Daigo

2024

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Genome-wide association study of individual differences of human lymphocyte profiles using large-scale cytometry data

Journal of human genetics, 2021-06, Vol.66 (6), p.557-567

2021

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The opposite aging effect to single cell transcriptome profile among cell subsets

Biogerontology (Dordrecht), 2024-11, Vol.25 (6), p.1253-1262

Okada, Daigo

2024

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Cell population‐based framework of genetic epidemiology in the single‐cell omics era

BioEssays, 2022-01, Vol.44 (1), p.e2100118-n/a

2022

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Bioinformatic Identification of Potential RNA Alterations on the Atrial Fibrillation Remodeling from Human Pulmonary Veins

International journal of molecular sciences, 2023-06, Vol.24 (13), p.10501

2023

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Delving into gene-set multiplex networks facilitated by a k-nearest neighbor-based measure of similarity

Computational and structural biotechnology journal, 2023-01, Vol.21, p.4988-5002

2023

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Mathematical model for the relationship between single-cell and bulk gene expression to clarify the interpretation of bulk gene expression data

Computational and structural biotechnology journal, 2022-01, Vol.20, p.4850-4859

2022

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Data-driven identification and classification of nonlinear aging patterns reveals the landscape of associations between DNA methylation and aging

Human genomics, 2023-02, Vol.17 (1), p.8-8, Article 8

2023

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Publisher Correction: Genome-wide association study of individual differences of human lymphocyte profiles using large-scale cytometry data

Journal of human genetics, 2021-06, Vol.66 (6), p.643-643

2021

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Outcome of the risk‐stratified desensitization protocol in donor‐specific antibody‐positive living kidney transplant recipients: a retrospective study

Transplant international, 2018-09, Vol.31 (9), p.1008-1017

2018

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Comparative Study of Transcriptome in the Hearts Isolated from Mice, Rats, and Humans

Biomolecules (Basel, Switzerland), 2022-06, Vol.12 (6), p.859

2022

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An intersection network based on combining SNP coassociation and RNA coexpression networks for feed utilization traits in Japanese Black cattle1

Journal of animal science, 2018-06, Vol.96 (7), p.2553-2566

2018

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Novel insight into the correlation between hernia orifice of cystocele and lower urinary tract function: a pilot study

BMC women's health, 2022-05, Vol.22 (1), p.164-164, Article 164

2022

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Higher immunoglobulin A nephropathy recurrence in related‐donor kidney transplants: The Japan Academic Consortium of Kidney Transplantation study

International journal of urology, 2019-09, Vol.26 (9), p.903-909

2019

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Extension of Sinkhorn Method: Optimal Movement Estimation of Agents Moving at Constant Velocity

Transactions of the Japanese Society for Artificial Intelligence, 2019/09/01, Vol.34(5), pp.D-J13_1-7

2019

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Decreased tacrolimus concentration due to Campylobacter colitis

Saudi journal of kidney diseases and transplantation, 2019-11, Vol.30 (6), p.1490-1491

2019

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Recipient myeloperoxidase-producing cells regulate antibody-mediated acute versus chronic kidney allograft rejection

JCI insight, 2021-07, Vol.6 (13)

2021

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Plasma proteins as potential biomarkers of aging of single tissue and cell type

Biogerontology (Dordrecht), 2024-02, Vol.25 (1), p.177-181

Okada, Daigo

2024

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Living‐donor kidney transplantation in an end‐stage renal disease patient with situs inversus totalis: Three case reports

IJU case reports, 2019-03, Vol.2 (2), p.105-108

2019

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Two‐step technique of early adrenal artery ligation in open adrenalectomy of giant right adrenal pheochromocytomas: Three case reports

IJU case reports, 2019-01, Vol.2 (1), p.15-18

2019

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Visualization of the landscape of the read alignment shape of ATAC‐seq data using Hellinger distance metric

Genes to cells : devoted to molecular & cellular mechanisms, 2024-01, Vol.29 (1), p.5-16

2024

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Interpretation of omics data analyses

Data-driven detection of age-related arbitrary monotonic changes in single-cell gene expression distributions

Data-driven comparison of multiple high-dimensional single-cell expression profiles

Decomposition of a set of distributions in extended exponential family form for distinguishing multiple oligo-dimensional marker expression profiles of single-cell populations and visualizing their dynamics

Application of a mathematical model to clarify the statistical characteristics of a pan-tissue DNA methylation clock

Genome-wide association study of individual differences of human lymphocyte profiles using large-scale cytometry data

The opposite aging effect to single cell transcriptome profile among cell subsets

Cell population‐based framework of genetic epidemiology in the single‐cell omics era

Bioinformatic Identification of Potential RNA Alterations on the Atrial Fibrillation Remodeling from Human Pulmonary Veins

Delving into gene-set multiplex networks facilitated by a k-nearest neighbor-based measure of similarity

Mathematical model for the relationship between single-cell and bulk gene expression to clarify the interpretation of bulk gene expression data

Data-driven identification and classification of nonlinear aging patterns reveals the landscape of associations between DNA methylation and aging

Publisher Correction: Genome-wide association study of individual differences of human lymphocyte profiles using large-scale cytometry data

Outcome of the risk‐stratified desensitization protocol in donor‐specific antibody‐positive living kidney transplant recipients: a retrospective study

Comparative Study of Transcriptome in the Hearts Isolated from Mice, Rats, and Humans

An intersection network based on combining SNP coassociation and RNA coexpression networks for feed utilization traits in Japanese Black cattle1

Novel insight into the correlation between hernia orifice of cystocele and lower urinary tract function: a pilot study

Higher immunoglobulin A nephropathy recurrence in related‐donor kidney transplants: The Japan Academic Consortium of Kidney Transplantation study

Extension of Sinkhorn Method: Optimal Movement Estimation of Agents Moving at Constant Velocity

Decreased tacrolimus concentration due to Campylobacter colitis

Recipient myeloperoxidase-producing cells regulate antibody-mediated acute versus chronic kidney allograft rejection

Plasma proteins as potential biomarkers of aging of single tissue and cell type

Living‐donor kidney transplantation in an end‐stage renal disease patient with situs inversus totalis: Three case reports

Two‐step technique of early adrenal artery ligation in open adrenalectomy of giant right adrenal pheochromocytomas: Three case reports

Visualization of the landscape of the read alignment shape of ATAC‐seq data using Hellinger distance metric

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