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Protein folding intermediates on the dimensionality reduced landscape with UMAP and native contact likelihood

The Journal of chemical physics, 2022-08, Vol.157 (7), p.075101-075101

2022

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Coenzyme‐binding pathway on glutamate dehydrogenase suggested from multiple‐binding sites visualized by cryo‐electron microscopy

The FEBS journal, 2023-12, Vol.290 (23), p.5514-5535

2023

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Red light-induced structure changes in phytochrome A from Pisum sativum

Scientific reports, 2021-02, Vol.11 (1), p.2827-2827, Article 2827

2021

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Energy landscape of domain motion in glutamate dehydrogenase deduced from cryo‐electron microscopy

The FEBS journal, 2020-08, Vol.287 (16), p.3472-3493

2020

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CryoEM-sampling of metastable conformations appearing in cofactor-ligand association and catalysis of glutamate dehydrogenase

Scientific reports, 2024-05, Vol.14 (1), p.11165-11165, Article 11165

2024

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Prediction of hydrophilic and hydrophobic hydration structure of protein by neural network optimized using experimental data

Scientific reports, 2023-02, Vol.13 (1), p.2183-2183, Article 2183

2023

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Assessment of Force Field Accuracy Using Cryogenic Electron Microscopy Data of Hyper-thermostable Glutamate Dehydrogenase

The journal of physical chemistry. B, 2020-10, Vol.124 (39), p.8479-8494

2020

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Common architectures in cyanobacteria Prochlorococcus cells visualized by X-ray diffraction imaging using X-ray free electron laser

Scientific reports, 2021-02, Vol.11 (1), p.3877-3877, Article 3877

2021

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Ultrastructure and fractal property of chromosomes in close-to-native yeast nuclei visualized using X-ray laser diffraction

Scientific reports, 2023-07, Vol.13 (1), p.10802-10802, Article 10802

2023

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Domain Organization in Plant Blue-Light Receptor Phototropin2 of Arabidopsis thaliana Studied by Small-Angle X-ray Scattering

International journal of molecular sciences, 2020-09, Vol.21 (18), p.6638

2020

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Molecular shape under far‐red light and red light‐induced association of Arabidopsis phytochrome B

The FEBS journal, 2020-04, Vol.287 (8), p.1612-1625

2020

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Blue light–excited LOV1 and LOV2 domains cooperatively regulate the kinase activity of full-length phototropin2 from Arabidopsis

The Journal of biological chemistry, 2018-01, Vol.293 (3), p.963-972

2018

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Methods and application of coherent X-ray diffraction imaging of noncrystalline particles

Biophysical reviews, 2020-04, Vol.12 (2), p.541-567

2020

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Classification of ab initio models of proteins restored from small‐angle X‐ray scattering

Journal of synchrotron radiation, 2018-09, Vol.25 (5), p.1379-1388

2018

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Cryogenic Coherent X-ray Diffraction Imaging Techniques for Structural Analyses of Biological Cells and Cellular Organelles

Microscopy and microanalysis, 2018-08, Vol.24 (S2), p.14-15

2018

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Protein folding pathway and intermediates on the dimensionality reduced landscape with UMAP and native contact likelihood

Biophysical journal, 2023-02, Vol.122 (3), p.423a-423a

2023

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Specimen preparation for cryogenic coherent X-ray diffraction imaging of biological cells and cellular organelles by using the X-ray free-electron laser at SACLA

Journal of synchrotron radiation, 2016-07, Vol.23 (4), p.975-989

2016

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Diffraction apparatus and procedure in tomography X‐ray diffraction imaging for biological cells at cryogenic temperature using synchrotron X‐ray radiation

Journal of synchrotron radiation, 2018-11, Vol.25 (6), p.1803-1818

2018

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Deducing Free-Energy Landscape of Biomolecular Dynamics from Cryo-Electron Microscopy Images

Nihon Kessho Gakkaishi, 2022/12/15, Vol.64(4), pp.300-305

2022

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Blue Light-excited Light-Oxygen-Voltage-sensing Domain 2 (LOV2) Triggers a Rearrangement of the Kinase Domain to Induce Phosphorylation Activity in Arabidopsis Phototropin1

The Journal of biological chemistry, 2016-09, Vol.291 (38), p.19975-19984

2016

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クライオ電子顕微鏡マップを用いた生体高分子動態の自由エネルギー地形解析

日本結晶学会誌, 2022/12/15, Vol.64(4), pp.300-305

2022

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Coherent X-ray Diffraction Imaging of Cyanidioschyzon merolae

Cyanidioschyzon merolae, p.153-173

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Protein folding intermediates on the dimensionality reduced landscape with UMAP and native contact likelihood

Coenzyme‐binding pathway on glutamate dehydrogenase suggested from multiple‐binding sites visualized by cryo‐electron microscopy

Red light-induced structure changes in phytochrome A from Pisum sativum

Energy landscape of domain motion in glutamate dehydrogenase deduced from cryo‐electron microscopy

CryoEM-sampling of metastable conformations appearing in cofactor-ligand association and catalysis of glutamate dehydrogenase

Prediction of hydrophilic and hydrophobic hydration structure of protein by neural network optimized using experimental data

Assessment of Force Field Accuracy Using Cryogenic Electron Microscopy Data of Hyper-thermostable Glutamate Dehydrogenase

Common architectures in cyanobacteria Prochlorococcus cells visualized by X-ray diffraction imaging using X-ray free electron laser

Ultrastructure and fractal property of chromosomes in close-to-native yeast nuclei visualized using X-ray laser diffraction

Domain Organization in Plant Blue-Light Receptor Phototropin2 of Arabidopsis thaliana Studied by Small-Angle X-ray Scattering

Molecular shape under far‐red light and red light‐induced association of Arabidopsis phytochrome B

Blue light–excited LOV1 and LOV2 domains cooperatively regulate the kinase activity of full-length phototropin2 from Arabidopsis

Methods and application of coherent X-ray diffraction imaging of noncrystalline particles

Classification of ab initio models of proteins restored from small‐angle X‐ray scattering

Cryogenic Coherent X-ray Diffraction Imaging Techniques for Structural Analyses of Biological Cells and Cellular Organelles

Protein folding pathway and intermediates on the dimensionality reduced landscape with UMAP and native contact likelihood

Specimen preparation for cryogenic coherent X-ray diffraction imaging of biological cells and cellular organelles by using the X-ray free-electron laser at SACLA

Diffraction apparatus and procedure in tomography X‐ray diffraction imaging for biological cells at cryogenic temperature using synchrotron X‐ray radiation

Deducing Free-Energy Landscape of Biomolecular Dynamics from Cryo-Electron Microscopy Images

Blue Light-excited Light-Oxygen-Voltage-sensing Domain 2 (LOV2) Triggers a Rearrangement of the Kinase Domain to Induce Phosphorylation Activity in Arabidopsis Phototropin1

クライオ電子顕微鏡マップを用いた生体高分子動態の自由エネルギー地形解析

Coherent X-ray Diffraction Imaging of Cyanidioschyzon merolae

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