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Hydrophobic Surface Enhances Electrostatic Interaction in Water

Physical review letters, 2018-11, Vol.121 (20), p.206002-206002, Article 206002

2018

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Erratum: “Effects of Solvent Density Distribution and Dipole–Dipole Interaction on a Polarization Fluctuation near an Electrically Neutral Surface” [J. Phys. Soc. Jpn. 91, 114602 (2022)]

Journal of the Physical Society of Japan, 2023-07, Vol.92 (7)

2023

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Effects of Solvent Density Distribution and Dipole–Dipole Interaction on a Polarization Fluctuation near an Electrically Neutral Surface

Journal of the Physical Society of Japan, 2022-11, Vol.91 (11)

2022

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Intrinsic disorder accelerates dissociation rather than association

Proteins, structure, function, and bioinformatics, 2016-08, Vol.84 (8), p.1124-1133

2016

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Long-range coupling between ATP-binding and lever-arm regions in myosin via dielectric allostery

The Journal of chemical physics, 2017-12, Vol.147 (21), p.215101-215101

2017

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Dielectric Allostery of Protein: Response of Myosin to ATP Binding

The journal of physical chemistry. B, 2016-12, Vol.120 (51), p.13047-13055

2016

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Coupling of Redox and Structural States in Cytochrome P450 Reductase Studied by Molecular Dynamics Simulation

Scientific reports, 2019-06, Vol.9 (1), p.9341-8, Article 9341

2019

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Over-Destabilization of Protein–Protein Interaction in Generalized Born Model and Utility of Energy Density Integration Cutoff

The journal of physical chemistry. B, 2017-05, Vol.121 (18), p.4669-4677

2017

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Electrostatic balance between global repulsion and local attraction in reentrant polymerization of actin

Cytoskeleton (Hoboken, N.J.), 2017-12, Vol.74 (12), p.504-511

2017

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Integration of AlphaFold with Molecular Dynamics for Efficient Conformational Sampling of Transporter Protein NarK

The journal of physical chemistry. B, 2024-08, Vol.128 (31), p.7530-7537

2024

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Actin Depolymerization and Cofilin Binding Induced by Dielectric Allostery

Biophysical journal, 2020-02, Vol.118 (3), p.126a-126a

2020

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Electrostatic Ratchet for Successive Peptide Synthesis in Nonribosomal Molecular Machine RimK

Journal of the American Chemical Society, 2023-07, Vol.145 (29), p.15963-15970

2023

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Accelerated Molecular Dynamics and AlphaFold Uncover a Missing Conformational State of Transporter Protein OxlT

The journal of physical chemistry letters, 2024-01, Vol.15 (3), p.725-732

2024

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Ohnuki et al. Reply

Physical review letters, 2019-07, Vol.123 (4), p.049602-049602, Article 049602

2019

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Electrostatic and Allosteric Response of Myosin as a Mechanosensor

Biophysical journal, 2016-02, Vol.110 (3), p.95a-95a

2016

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Electrostatic and Allosteric Response of Myosin upon ATP Binding

Biophysical journal, 2016-02, Vol.110 (3), p.383a-383a

2016

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Cover Image, Volume 74, Issue 12

Cytoskeleton (Hoboken, N.J.), 2017-12, Vol.74 (12), p.C1

2017

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Intrinsic disorder accelerates dissociation rather than association: Intrinsic Disorder Accelerates Dissociation

Proteins, structure, function, and bioinformatics, 2016-08, Vol.84 (8), p.1124-1133

2016

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Piezoelectric allostery of protein

Physical review. E, 2016-07, Vol.94 (1-1), p.012406-012406, Article 012406

2016

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Different Roles of Backbone-Originated and Native-Contact-Originated Flexibilities of an Intrinsically Disordered Protein in Fast Binding and Unbinding

Biophysical journal, 2014-01, Vol.106 (2), p.482a-483a

2014

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2P042 Nucleotide-dependent structural states of G-actin observed by MD simulation and its implication for F-actin stability(01B. Protein: Structure & Function,Poster)

Seibutsu Butsuri, 2013/09/13, Vol.53(supplement1-2), pp.S165

2013

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2P042 MD で観測されたGアクチンのヌクレオチド依存構造状態とFアクチン安定性との関連(01B.蛋白質:構造機能相関,ポスター,日本生物物理学会年会第51回(2013年度))

生物物理, 2013/09/13, Vol.53(supplement1-2), pp.S165

2013

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2P129 Generalized Bornモデルによる蛋白質-蛋白質間相互作用計算の重要パラメータ(07. 水・水和/電解質,ポスター,第52回日本生物物理学会年会(2014年度))

生物物理, 2014/08/20, Vol.54(supplement1-2), pp.S216

2014

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2P061 天然変性蛋白質のリン酸化に共通して見られる分子内静電相互作用の特徴(01C. 蛋白質:物性,ポスター,第52回日本生物物理学会年会(2014年度))

生物物理, 2014/08/20, Vol.54(supplement1-2), pp.S205

2014

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2P061 Common intra-molecular electrostatic property of intrinsically disordered proteins for phosphorylation(01C. Protein: Property,Poster,The 52nd Annual Meeting of the Biophysical Society of Japan(BSJ2014))

Seibutsu Butsuri, 2014/08/20, Vol.54(supplement1-2), pp.S205

2014

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Hydrophobic Surface Enhances Electrostatic Interaction in Water

Erratum: “Effects of Solvent Density Distribution and Dipole–Dipole Interaction on a Polarization Fluctuation near an Electrically Neutral Surface” [J. Phys. Soc. Jpn. 91, 114602 (2022)]

Effects of Solvent Density Distribution and Dipole–Dipole Interaction on a Polarization Fluctuation near an Electrically Neutral Surface

Intrinsic disorder accelerates dissociation rather than association

Long-range coupling between ATP-binding and lever-arm regions in myosin via dielectric allostery

Dielectric Allostery of Protein: Response of Myosin to ATP Binding

Coupling of Redox and Structural States in Cytochrome P450 Reductase Studied by Molecular Dynamics Simulation

Over-Destabilization of Protein–Protein Interaction in Generalized Born Model and Utility of Energy Density Integration Cutoff

Electrostatic balance between global repulsion and local attraction in reentrant polymerization of actin

Integration of AlphaFold with Molecular Dynamics for Efficient Conformational Sampling of Transporter Protein NarK

Actin Depolymerization and Cofilin Binding Induced by Dielectric Allostery

Electrostatic Ratchet for Successive Peptide Synthesis in Nonribosomal Molecular Machine RimK

Accelerated Molecular Dynamics and AlphaFold Uncover a Missing Conformational State of Transporter Protein OxlT

Ohnuki et al. Reply

Electrostatic and Allosteric Response of Myosin as a Mechanosensor

Electrostatic and Allosteric Response of Myosin upon ATP Binding

Cover Image, Volume 74, Issue 12

Intrinsic disorder accelerates dissociation rather than association: Intrinsic Disorder Accelerates Dissociation

Piezoelectric allostery of protein

Different Roles of Backbone-Originated and Native-Contact-Originated Flexibilities of an Intrinsically Disordered Protein in Fast Binding and Unbinding

2P042 Nucleotide-dependent structural states of G-actin observed by MD simulation and its implication for F-actin stability(01B. Protein: Structure & Function,Poster)

2P042 MD で観測されたGアクチンのヌクレオチド依存構造状態とFアクチン安定性との関連(01B.蛋白質:構造機能相関,ポスター,日本生物物理学会年会第51回(2013年度))

2P129 Generalized Bornモデルによる蛋白質-蛋白質間相互作用計算の重要パラメータ(07. 水・水和/電解質,ポスター,第52回日本生物物理学会年会(2014年度))

2P061 天然変性蛋白質のリン酸化に共通して見られる分子内静電相互作用の特徴(01C. 蛋白質:物性,ポスター,第52回日本生物物理学会年会(2014年度))

2P061 Common intra-molecular electrostatic property of intrinsically disordered proteins for phosphorylation(01C. Protein: Property,Poster,The 52nd Annual Meeting of the Biophysical Society of Japan(BSJ2014))

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