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Integrating diverse datasets improves developmental enhancer prediction

PLoS computational biology, 2014-06, Vol.10 (6), p.e1003677-e1003677

2014

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Distinct modes of regulation by chromatin encoded through nucleosome positioning signals

PLoS computational biology, 2008-11, Vol.4 (11), p.e1000216-e1000216

2008

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Thermodynamics-based models of transcriptional regulation by enhancers: the roles of synergistic activation, cooperative binding and short-range repression

PLoS computational biology, 2010-09, Vol.6 (9), p.e1000935

2010

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ChromaSig: a probabilistic approach to finding common chromatin signatures in the human genome

PLoS computational biology, 2008-10, Vol.4 (10), p.e1000201-e1000201

2008

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Binding Site Identification and Flexible Docking of Single Stranded RNA to Proteins Using a Fragment-Based Approach

PLoS computational biology, 2016-01, Vol.12 (1), p.e1004697-e1004697

2016

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Molecular predictors of 3D morphogenesis by breast cancer cell lines in 3D culture

PLoS computational biology, 2010-02, Vol.6 (2), p.e1000684-e1000684

2010

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High resolution models of transcription factor-DNA affinities improve in vitro and in vivo binding predictions

PLoS computational biology, 2010-09, Vol.6 (9), p.e1000916

2010

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Localizing genes to cerebellar layers by classifying ISH images

PLoS computational biology, 2012-12, Vol.8 (12), p.e1002790-e1002790

2012

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Classifying RNA-binding proteins based on electrostatic properties

PLoS computational biology, 2008-08, Vol.4 (8), p.e1000146-e1000146

2008

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Orthologous transcription factors in bacteria have different functions and regulate different genes

PLoS computational biology, 2007-09, Vol.3 (9), p.1739-1750

2007

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Meta-analysis of inter-species liver co-expression networks elucidates traits associated with common human diseases

PLoS computational biology, 2009-12, Vol.5 (12), p.e1000616-e1000616

2009

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Spatial bistability generates hunchback expression sharpness in the Drosophila embryo

PLoS computational biology, 2008-09, Vol.4 (9), p.e1000184-e1000184

2008

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Conserved expression patterns predict microRNA targets

PLoS computational biology, 2009-09, Vol.5 (9), p.e1000513-e1000513

2009

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Construction and modelling of an inducible positive feedback loop stably integrated in a mammalian cell-line

PLoS computational biology, 2011-06, Vol.7 (6), p.e1002074-e1002074

2011

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Transcriptional regulation: effects of promoter proximal pausing on speed, synchrony and reliability

PLoS computational biology, 2011-05, Vol.7 (5), p.e1001136-e1001136

2011

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Improving the Caenorhabditis elegans genome annotation using machine learning

PLoS computational biology, 2007-02, Vol.3 (2), p.e20-e20

2007

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Large-scale discovery of promoter motifs in Drosophila melanogaster

PLoS computational biology, 2007-01, Vol.3 (1), p.e7-e7

2007

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Efficient algorithms for probing the RNA mutation landscape

PLoS computational biology, 2008-08, Vol.4 (8), p.e1000124-e1000124

2008

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Quantitative epistasis analysis and pathway inference from genetic interaction data

PLoS computational biology, 2011-05, Vol.7 (5), p.e1002048

2011

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Learning a weighted sequence model of the nucleosome core and linker yields more accurate predictions in Saccharomyces cerevisiae and Homo sapiens

PLoS computational biology, 2010-07, Vol.6 (7), p.e1000834-e1000834

2010

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Evaluating gene expression dynamics using pairwise RNA FISH data

PLoS computational biology, 2010-11, Vol.6 (11), p.e1000979-e1000979

2010

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Cooperativity dominates the genomic organization of p53-response elements: a mechanistic view

PLoS computational biology, 2009-07, Vol.5 (7), p.e1000448-e1000448

2009

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Modeling an evolutionary conserved circadian cis-element

PLoS computational biology, 2008-02, Vol.4 (2), p.e38-e38

2008

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Courage and Character, Leaders and Legends: An Interview with Allan D. Kirk, MD, PhD, FACS

Progress in transplantation (Aliso Viejo, Calif.), 2015-09, Vol.25 (3), p.192-194

Ohler, Linda

2015

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Isotopic synovectomy with P-32 in paediatric patients with haemophilia

Haemophilia : the official journal of the World Federation of Hemophilia, 2000-09, Vol.6 (5), p.547-555

2000

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Integrating diverse datasets improves developmental enhancer prediction

Distinct modes of regulation by chromatin encoded through nucleosome positioning signals

Thermodynamics-based models of transcriptional regulation by enhancers: the roles of synergistic activation, cooperative binding and short-range repression

ChromaSig: a probabilistic approach to finding common chromatin signatures in the human genome

Binding Site Identification and Flexible Docking of Single Stranded RNA to Proteins Using a Fragment-Based Approach

Molecular predictors of 3D morphogenesis by breast cancer cell lines in 3D culture

High resolution models of transcription factor-DNA affinities improve in vitro and in vivo binding predictions

Localizing genes to cerebellar layers by classifying ISH images

Classifying RNA-binding proteins based on electrostatic properties

Orthologous transcription factors in bacteria have different functions and regulate different genes

Meta-analysis of inter-species liver co-expression networks elucidates traits associated with common human diseases

Spatial bistability generates hunchback expression sharpness in the Drosophila embryo

Conserved expression patterns predict microRNA targets

Construction and modelling of an inducible positive feedback loop stably integrated in a mammalian cell-line

Transcriptional regulation: effects of promoter proximal pausing on speed, synchrony and reliability

Improving the Caenorhabditis elegans genome annotation using machine learning

Large-scale discovery of promoter motifs in Drosophila melanogaster

Efficient algorithms for probing the RNA mutation landscape

Quantitative epistasis analysis and pathway inference from genetic interaction data

Learning a weighted sequence model of the nucleosome core and linker yields more accurate predictions in Saccharomyces cerevisiae and Homo sapiens

Evaluating gene expression dynamics using pairwise RNA FISH data

Cooperativity dominates the genomic organization of p53-response elements: a mechanistic view

Modeling an evolutionary conserved circadian cis-element

Courage and Character, Leaders and Legends: An Interview with Allan D. Kirk, MD, PhD, FACS

Isotopic synovectomy with P-32 in paediatric patients with haemophilia

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