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Computational Prediction of Type III and IV Secreted Effectors in Gram-Negative Bacteria

Infection and Immunity, 2011-01, Vol.79 (1), p.23-32

2011

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ScalaBLAST 2.0: rapid and robust BLAST calculations on multiprocessor systems

Bioinformatics, 2013-03, Vol.29 (6), p.797-798

2013

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Physicochemical property distributions for accurate and rapid pairwise protein homology detection

BMC bioinformatics, 2010-03, Vol.11 (1), p.145-145, Article 145

2010

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SVM-HUSTLE—an iterative semi-supervised machine learning approach for pairwise protein remote homology detection

Bioinformatics, 2008-03, Vol.24 (6), p.783-790

2008

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A support vector machine model for the prediction of proteotypic peptides for accurate mass and time proteomics

Bioinformatics, 2010-07, Vol.26 (13), p.1677-1683

2010

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A support vector machine model for the prediction of proteotypic peptides for accurate mass and time proteomics

Bioinformatics, 2008-07, Vol.24 (13), p.1503-1509

2008

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Defending Our Public Biological Databases as a Global Critical Infrastructure

Frontiers in bioengineering and biotechnology, 2019-04, Vol.7, p.58-58

2019

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A model of cyclic transcriptomic behavior in the cyanobacterium Cyanothece sp. ATCC 51142

Molecular bioSystems, 2011-08, Vol.7 (8), p.2407-2418

2011

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ScalaBLAST: A Scalable Implementation of BLAST for High-Performance Data-Intensive Bioinformatics Analysis

IEEE transactions on parallel and distributed systems, 2006-08, Vol.17 (8), p.740-749

2006

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Comparison of Probability and Likelihood Models for Peptide Identification from Tandem Mass Spectrometry Data

Journal of proteome research, 2005-09, Vol.4 (5), p.1687-1698

2005

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Advanced Computing Is at the Forefront of a New "Moonshot" Revolutionizing the North American Power Grid

Computing in science & engineering, 2024-05, p.1-13

2024

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A feature vector integration approach for a generalized support vector machine pairwise homology algorithm

Computational biology and chemistry, 2008-12, Vol.32 (6), p.458-461

2008

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PQuad—a visual analysis platform for proteomic data exploration of microbial organisms

Bioinformatics, 2007-07, Vol.23 (13), p.1705-1707

2007

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Integrating subcellular location for improving machine learning models of remote homology detection in eukaryotic organisms

Computational biology and chemistry, 2007-04, Vol.31 (2), p.138-142

2007

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Proactive routing mutation against stealthy Distributed Denial of Service attacks: metrics, modeling, and analysis

Journal of defense modeling and simulation, 2018-04, Vol.15 (2), p.219-230

2018

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Defending Our Public Biological Databases as a Global Critical Infrastructure

Frontiers in bioengineering and biotechnology, 2019-04, Vol.7

2019

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A Biosequence-Based Approach to Software Characterization

2016 IEEE Security and Privacy Workshops (SPW), 2016, p.118-125

2016

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SafeConfig 2015: Workshop on Automated Decision Making for Active Cyber Defense

Proceedings of the 22nd ACM SIGSAC Conference on Computer and Communications Security, 2015, p.1711-1712

2015

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An efficient machine learning approach to low-complexity filtering in biological sequences

2012 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology (CIBCB), 2012, p.237-243

2012

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LINEBACKER: LINE-Speed Bio-Inspired Analysis and Characterization for Event Recognition

2016 IEEE Security and Privacy Workshops (SPW), 2016, p.88-95

2016

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LINEBACkER: Bio-inspired data reduction toward real time network traffic analysis

2013 6th International Symposium on Resilient Control Systems (ISRCS), 2013, p.170-174

2013

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A generalized bio-inspired method for discovering sequence-based signatures

2013 IEEE International Conference on Intelligence and Security Informatics, 2013, p.330-332

2013

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Bringing high-performance computing to the biologist's workbench: approaches, applications, and challenges

Journal of physics. Conference series, 2008-07, Vol.125 (1), p.012052

2008

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Mathematical Model of the Rapidly Activating Delayed Rectifier Potassium Current IKr in Rabbit Sinoatrial Node

Journal of cardiovascular electrophysiology, 2002-11, Vol.13 (11), p.1131-1140

2002

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An organic model for detecting cyber-events

Proceedings of the Sixth Annual Workshop on Cyber Security and Information Intelligence Research, 2010, p.1-4

2010

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Computational Prediction of Type III and IV Secreted Effectors in Gram-Negative Bacteria

ScalaBLAST 2.0: rapid and robust BLAST calculations on multiprocessor systems

Physicochemical property distributions for accurate and rapid pairwise protein homology detection

SVM-HUSTLE—an iterative semi-supervised machine learning approach for pairwise protein remote homology detection

A support vector machine model for the prediction of proteotypic peptides for accurate mass and time proteomics

A support vector machine model for the prediction of proteotypic peptides for accurate mass and time proteomics

Defending Our Public Biological Databases as a Global Critical Infrastructure

A model of cyclic transcriptomic behavior in the cyanobacterium Cyanothece sp. ATCC 51142

ScalaBLAST: A Scalable Implementation of BLAST for High-Performance Data-Intensive Bioinformatics Analysis

Comparison of Probability and Likelihood Models for Peptide Identification from Tandem Mass Spectrometry Data

Advanced Computing Is at the Forefront of a New "Moonshot" Revolutionizing the North American Power Grid

A feature vector integration approach for a generalized support vector machine pairwise homology algorithm

PQuad—a visual analysis platform for proteomic data exploration of microbial organisms

Integrating subcellular location for improving machine learning models of remote homology detection in eukaryotic organisms

Proactive routing mutation against stealthy Distributed Denial of Service attacks: metrics, modeling, and analysis

Defending Our Public Biological Databases as a Global Critical Infrastructure

A Biosequence-Based Approach to Software Characterization

SafeConfig 2015: Workshop on Automated Decision Making for Active Cyber Defense

An efficient machine learning approach to low-complexity filtering in biological sequences

LINEBACKER: LINE-Speed Bio-Inspired Analysis and Characterization for Event Recognition

LINEBACkER: Bio-inspired data reduction toward real time network traffic analysis

A generalized bio-inspired method for discovering sequence-based signatures

Bringing high-performance computing to the biologist's workbench: approaches, applications, and challenges

Mathematical Model of the Rapidly Activating Delayed Rectifier Potassium Current IKr in Rabbit Sinoatrial Node

An organic model for detecting cyber-events

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