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PepFun: Open Source Protocols for Peptide-Related Computational Analysis

Molecules (Basel, Switzerland), 2021-03, Vol.26 (6), p.1664

2021

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pyPept: a python library to generate atomistic 2D and 3D representations of peptides

Journal of cheminformatics, 2023-09, Vol.15 (1), p.79-79, Article 79

2023

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Multiple-Allele MHC Class II Epitope Engineering by a Molecular Dynamics-Based Evolution Protocol

Frontiers in immunology, 2022-04, Vol.13, p.862851-862851

2022

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An automated protocol for modelling peptide substrates to proteases

BMC bioinformatics, 2020-12, Vol.21 (1), p.586-20, Article 586

2020

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Open protocols for docking and MD-based scoring of peptide substrates

Artificial intelligence in the life sciences, 2022-12, Vol.2, p.100044, Article 100044

2022

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Identification of 7-Ketocholesterol-Modulated Pathways and Sterculic Acid Protective Effect in Retinal Pigmented Epithelium Cells by Using Genome-Wide Transcriptomic Analysis

International journal of molecular sciences, 2023-04, Vol.24 (8), p.7459

2023

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Toxic Determination of Cry11 Mutated Proteins Obtained Using Rational Design and Its Computational Analysis

International journal of molecular sciences, 2023-05, Vol.24 (10), p.9079

2023

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Anti-Herpetic, Anti-Dengue and Antineoplastic Activities of Simple and Heterocycle-Fused Derivatives of Terpenyl-1,4-Naphthoquinone and 1,4-Anthraquinone

Molecules (Basel, Switzerland), 2019-04, Vol.24 (7), p.1279

2019

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Connection between MHC class II binding and aggregation propensity: The antigenic peptide 10 of Paracoccidioides brasiliensis as a benchmark study

Computational and structural biotechnology journal, 2023-01, Vol.21, p.1746-1758

2023

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myChEMBL: a virtual machine implementation of open data and cheminformatics tools

Bioinformatics, 2014-01, Vol.30 (2), p.298-300

2014

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NTD Health: an electronic medical record system for neglected tropical diseases

Biomedica : revista del Instituto Nacional de Salud, 2022-12, Vol.42 (4), p.602-610

2022

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Targeting 7KCh-Induced Cell Death Response Mediated by p38, P2X7 and GSDME in Retinal Pigment Epithelium Cells with Sterculic Acid

Pharmaceutics, 2023-11, Vol.15 (11), p.2590

2023

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Pepfun 2.0: Improved Protocols for the Analysis of Natural and Modified Peptides

Future drug discovery, 2023-06, Vol.5 (2)

Ochoa, Rodrigo

2023

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Toxic Activity, Molecular Modeling and Docking Simulations of Bacillus thuringiensis Cry11 Toxin Variants Obtained via DNA Shuffling

Frontiers in microbiology, 2018-10, Vol.9, p.2461-2461

2018

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Assessing the fast prediction of peptide conformers and the impact of non-natural modifications

Journal of molecular graphics & modelling, 2023-12, Vol.125, p.108608-108608, Article 108608

2023

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Sterculic Acid Alters Adhesion Molecules Expression and Extracellular Matrix Compounds to Regulate Migration of Lung Cancer Cells

Cancers, 2021-08, Vol.13 (17), p.4370

2021

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Search of Allosteric Inhibitors and Associated Proteins of an AKT- like Kinase from Trypanosoma cruzi

International journal of molecular sciences, 2018-12, Vol.19 (12), p.3951

2018

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In vitro and in silico study of an exclusive insertion in the nicotinamide/nicotinate mononucleotide adenylyltransferase from Leishmania braziliensis

Heliyon, 2022-12, Vol.8 (12), p.e12203-e12203, Article e12203

2022

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Identification of a RAC/AKT-like gene in Leishmania parasites as a putative therapeutic target in leishmaniasis

Parasites & vectors, 2017-10, Vol.10 (1), p.458-458, Article 458

2017

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Impact of Structural Observables From Simulations to Predict the Effect of Single-Point Mutations in MHC Class II Peptide Binders

Frontiers in molecular biosciences, 2021-03, Vol.8, p.636562-636562

2021

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Application of ensemble pharmacophore-based virtual screening to the discovery of novel antimitotic tubulin inhibitors

Computational and structural biotechnology journal, 2021-01, Vol.19, p.4360-4372

2021

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Genetic diversity analysis in dairy cows of Nariño, southwestern Colombia

Semina. Ciências agrárias : revista cultural e científica da Universidade Estadual de Londrina, 2022-11, Vol.43 (6), p.2563-2578

2022

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Predictive Biomarkers of Age-Related Macular Degeneration Response to Anti-VEGF Treatment

Journal of personalized medicine, 2021-12, Vol.11 (12), p.1329

2021

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Genome-Wide Transcriptomic Analysis Identifies Pathways Regulated by Sterculic Acid in Retinal Pigmented Epithelium Cells

Cells (Basel, Switzerland), 2020-05, Vol.9 (5), p.1187

2020

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In Silico, In Vitro, and Pharmacokinetic Studies of UBMC-4, a Potential Novel Compound for Treating against Trypanosoma cruzi

Pathogens (Basel), 2022-05, Vol.11 (6), p.616

2022

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