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Image processing for electron microscopy single-particle analysis using XMIPP

Nature protocols, 2008-06, Vol.3 (6), p.977-990

2008

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Fast and accurate conversion of atomic models into electron density maps

AIMS biophysics, 2015-01, Vol.2 (1), p.8-20

2015

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Translocation dynamics of sorting nexin 27 in activated T cells

Journal of cell science, 2011-03, Vol.124 (5), p.776-788

2011

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Cryo-EM structure of a tetrameric photosystem I from Chroococcidiopsis TS-821, a thermophilic, unicellular, non-heterocyst-forming cyanobacterium

Plant communications, 2022-01, Vol.3 (1), p.100248-100248, Article 100248

2022

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Quantitative characterization of membrane-protein reversible association using FCS

Biophysical journal, 2023-06, Vol.122 (11), p.2285-2300

2023

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NFFinder: an online bioinformatics tool for searching similar transcriptomics experiments in the context of drug repositioning

Nucleic acids research, 2015-07, Vol.43 (W1), p.W193-W199

2015

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3DBionotes COVID-19 edition

Bioinformatics (Oxford, England), 2021-11, Vol.37 (22), p.4258-4260

2021

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Advances in Xmipp for Cryo–Electron Microscopy: From Xmipp to Scipion

Molecules (Basel, Switzerland), 2021-10, Vol.26 (20), p.6224

2021

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Safety and vaccine-induced HIV-1 immune responses in healthy volunteers following a late MVA-B boost 4 years after the last immunization

PloS one, 2017-10, Vol.12 (10), p.e0186602-e0186602

2017

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Gene signature associated with benign neurofibroma transformation to malignant peripheral nerve sheath tumors

PloS one, 2017-05, Vol.12 (5), p.e0178316-e0178316

2017

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Structural insights into influenza A virus ribonucleoproteins reveal a processive helical track as transcription mechanism

Nature microbiology, 2020-05, Vol.5 (5), p.727-734

2020

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Maximum-likelihood Multi-reference Refinement for Electron Microscopy Images

Journal of molecular biology, 2005-04, Vol.348 (1), p.139-149

2005

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CTF Challenge: Result summary

Journal of structural biology, 2015-06, Vol.190 (3), p.348-359

2015

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Consistent and Elastic Registration of Histological Sections Using Vector-Spline Regularization

Computer Vision Approaches to Medical Image Analysis, p.85-95

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Single-particle reconstruction using L(2)-gradient flow

Journal of structural biology, 2011-12, Vol.176 (3), p.259-267

2011

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Structural basis for cooperativity of human monoclonal antibodies to meningococcal factor H-binding protein

Communications biology, 2019-06, Vol.2 (1), p.241-241, Article 241

2019

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Single-particle reconstruction using L2-gradient flow

Journal of structural biology, 2011-12, Vol.176 (3), p.259-267

2011

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Electron Microscopy Structural Insights into CPAP Oligomeric Behavior: A Plausible Assembly Process of a Supramolecular Scaffold of the Centrosome

Frontiers in molecular biosciences, 2017-03, Vol.4, p.17-17

2017

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Elastic image registration of 2-D gels for differential and repeatability studies

Proteomics (Weinheim), 2008, Vol.8 (1), p.62-65

2008

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SPI-EM: Towards a Tool For Predicting CATH Superfamilies in 3D-EM Maps

Journal of molecular biology, 2005-01, Vol.345 (4), p.759-771

2005

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3-D reconstruction of 2-D crystals in real space

IEEE transactions on image processing, 2004-04, Vol.13 (4), p.549-561

2004

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Iterative reconstruction for pet scanners with continuous scintillators

2015 37th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC), 2015, Vol.2015, p.2259-2262

2015

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Flexible image registration for the identification of best fitted protein models in 3D-EM maps

2008 5th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2008, p.983-986

2008

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3D reconstruction of 2D crystals from projections in real space

Proceedings IEEE International Symposium on Biomedical Imaging, 2002, p.689-692

2002

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Scipion-EM-ProDy: A Graphical Interface for the ProDy Python Package within the Scipion Workflow Engine Enabling Integration of Databases, Simulations and Cryo-Electron Microscopy Image Processing

International journal of molecular sciences, 2023-09, Vol.24 (18), p.14245

2023

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Image processing for electron microscopy single-particle analysis using XMIPP

Fast and accurate conversion of atomic models into electron density maps

Translocation dynamics of sorting nexin 27 in activated T cells

Cryo-EM structure of a tetrameric photosystem I from Chroococcidiopsis TS-821, a thermophilic, unicellular, non-heterocyst-forming cyanobacterium

Quantitative characterization of membrane-protein reversible association using FCS

NFFinder: an online bioinformatics tool for searching similar transcriptomics experiments in the context of drug repositioning

3DBionotes COVID-19 edition

Advances in Xmipp for Cryo–Electron Microscopy: From Xmipp to Scipion

Safety and vaccine-induced HIV-1 immune responses in healthy volunteers following a late MVA-B boost 4 years after the last immunization

Gene signature associated with benign neurofibroma transformation to malignant peripheral nerve sheath tumors

Structural insights into influenza A virus ribonucleoproteins reveal a processive helical track as transcription mechanism

Maximum-likelihood Multi-reference Refinement for Electron Microscopy Images

CTF Challenge: Result summary

Consistent and Elastic Registration of Histological Sections Using Vector-Spline Regularization

Single-particle reconstruction using L(2)-gradient flow

Structural basis for cooperativity of human monoclonal antibodies to meningococcal factor H-binding protein

Single-particle reconstruction using L2-gradient flow

Electron Microscopy Structural Insights into CPAP Oligomeric Behavior: A Plausible Assembly Process of a Supramolecular Scaffold of the Centrosome

Elastic image registration of 2-D gels for differential and repeatability studies

SPI-EM: Towards a Tool For Predicting CATH Superfamilies in 3D-EM Maps

3-D reconstruction of 2-D crystals in real space

Iterative reconstruction for pet scanners with continuous scintillators

Flexible image registration for the identification of best fitted protein models in 3D-EM maps

3D reconstruction of 2D crystals from projections in real space

Scipion-EM-ProDy: A Graphical Interface for the ProDy Python Package within the Scipion Workflow Engine Enabling Integration of Databases, Simulations and Cryo-Electron Microscopy Image Processing

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