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Oxygen and glucose deprivation induces widespread alterations in mRNA translation within 20 minutes

Genome Biology, 2015-05, Vol.16 (1), p.90-90, Article 90

2015

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AMD1 mRNA employs ribosome stalling as a mechanism for molecular memory formation

Nature (London), 2018-01, Vol.553 (7688), p.356-360

2018

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GWIPS-viz: 2018 update

Nucleic acids research, 2018-01, Vol.46 (D1), p.D823-D830

2018

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Unusually efficient CUG initiation of an overlapping reading frame in POLG mRNA yields novel protein POLGARF

Proceedings of the National Academy of Sciences - PNAS, 2020-10, Vol.117 (40), p.24936-24946

2020

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Translation of 5' leaders is pervasive in genes resistant to eIF2 repression

eLife, 2015-01, Vol.4, p.e03971

2015

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Insights into the mechanisms of eukaryotic translation gained with ribosome profiling

Nucleic acids research, 2017-01, Vol.45 (2), p.513-526

2017

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GWIPS-viz: development of a ribo-seq genome browser

Nucleic acids research, 2014-01, Vol.42 (Database issue), p.D859-D864

2014

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The Evolutionary Transition of the RNA World to Obcells to Cellular-Based Life

Journal of molecular evolution, 2024-06, Vol.92 (3), p.278-285

O’Connor, Patrick B. F.

2024

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Comparative survey of the relative impact of mRNA features on local ribosome profiling read density

Nature communications, 2016-10, Vol.7 (1), p.12915-12915, Article 12915

2016

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Translation initiation downstream from annotated start codons in human mRNAs coevolves with the Kozak context

Genome research, 2020-07, Vol.30 (7), p.974-984

2020

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RiboGalaxy: A browser based platform for the alignment, analysis and visualization of ribosome profiling data

RNA biology, 2016-03, Vol.13 (3), p.316-319

2016

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rRNA:mRNA pairing alters the length and the symmetry of mRNA-protected fragments in ribosome profiling experiments

Bioinformatics, 2013-06, Vol.29 (12), p.1488-1491

2013

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The effect of heterogeneous Transcription Start Sites (TSS) on the translatome: implications for the mammalian cellular phenotype

BMC genomics, 2015-11, Vol.16 (1), p.986-986, Article 986

2015

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Ribosome profiling reveals downregulation of UMP biosynthesis as the major early response to phage infection

Microbiology spectrum, 2024-04, Vol.12 (4), p.e0398923-e0398923

2024

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Trips-Viz: a transcriptome browser for exploring Ribo-Seq data

Nucleic acids research, 2019-01, Vol.47 (D1), p.D847-D852

2019

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Rocaglates Induce Gain-of-Function Alterations to eIF4A and eIF4F

Cell reports (Cambridge), 2020-02, Vol.30 (8), p.2481-2488.e5

2020

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Evaluating data integrity in ribosome footprinting datasets through modelled polysome profiles

Nucleic acids research, 2022-10, Vol.50 (19), p.e112-e112

2022

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Streptomyces rare codon UUA: from features associated with 2 adpA related locations to candidate phage regulatory translational bypassing

RNA biology, 2023-12, Vol.20 (1), p.926-942

2023

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Polysomes Bypass a 50-Nucleotide Coding Gap Less Efficiently Than Monosomes Due to Attenuation of a 5′ mRNA Stem–Loop and Enhanced Drop-off

Journal of molecular biology, 2020-07, Vol.432 (16), p.4369-4387

2020

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In Vivo RNAi-Mediated eIF3m Knockdown Affects Ribosome Biogenesis and Transcription but Has Limited Impact on mRNA-Specific Translation

Molecular therapy. Nucleic acids, 2020-03, Vol.19, p.252-266

2020

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Itm2a silencing rescues lamin A mediated inhibition of 3T3-L1 adipocyte differentiation

Adipocyte, 2017-10, Vol.6 (4), p.259-276

2017

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Severe Hypoglycemia Requiring Medical Intervention in a Large Cohort of Adults With Diabetes Receiving Care in U.S. Integrated Health Care Delivery Systems: 2005-2011

Diabetes care, 2016-03, Vol.39 (3), p.363-370

2016

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Separate But Not Equal? A Cross-Sectional Study of Segregation by Payor Mix in Academic Primary Care Clinics

Journal of general internal medicine : JGIM, 2023-08, Vol.38 (10), p.2318-2325

2023

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Knowledge gaps in understanding the metabolic and clinical effects of excess folates/folic acid: a summary, and perspectives, from an NIH workshop

The American journal of clinical nutrition, 2020-11, Vol.112 (5), p.1390-1403

2020

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Functional Architectures of Local and Distal Regulation of Gene Expression in Multiple Human Tissues

American journal of human genetics, 2017-04, Vol.100 (4), p.605-616

2017

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Oxygen and glucose deprivation induces widespread alterations in mRNA translation within 20 minutes

AMD1 mRNA employs ribosome stalling as a mechanism for molecular memory formation

GWIPS-viz: 2018 update

Unusually efficient CUG initiation of an overlapping reading frame in POLG mRNA yields novel protein POLGARF

Translation of 5' leaders is pervasive in genes resistant to eIF2 repression

Insights into the mechanisms of eukaryotic translation gained with ribosome profiling

GWIPS-viz: development of a ribo-seq genome browser

The Evolutionary Transition of the RNA World to Obcells to Cellular-Based Life

Comparative survey of the relative impact of mRNA features on local ribosome profiling read density

Translation initiation downstream from annotated start codons in human mRNAs coevolves with the Kozak context

RiboGalaxy: A browser based platform for the alignment, analysis and visualization of ribosome profiling data

rRNA:mRNA pairing alters the length and the symmetry of mRNA-protected fragments in ribosome profiling experiments

The effect of heterogeneous Transcription Start Sites (TSS) on the translatome: implications for the mammalian cellular phenotype

Ribosome profiling reveals downregulation of UMP biosynthesis as the major early response to phage infection

Trips-Viz: a transcriptome browser for exploring Ribo-Seq data

Rocaglates Induce Gain-of-Function Alterations to eIF4A and eIF4F

Evaluating data integrity in ribosome footprinting datasets through modelled polysome profiles

Streptomyces rare codon UUA: from features associated with 2 adpA related locations to candidate phage regulatory translational bypassing

Polysomes Bypass a 50-Nucleotide Coding Gap Less Efficiently Than Monosomes Due to Attenuation of a 5′ mRNA Stem–Loop and Enhanced Drop-off

In Vivo RNAi-Mediated eIF3m Knockdown Affects Ribosome Biogenesis and Transcription but Has Limited Impact on mRNA-Specific Translation

Itm2a silencing rescues lamin A mediated inhibition of 3T3-L1 adipocyte differentiation

Severe Hypoglycemia Requiring Medical Intervention in a Large Cohort of Adults With Diabetes Receiving Care in U.S. Integrated Health Care Delivery Systems: 2005-2011

Separate But Not Equal? A Cross-Sectional Study of Segregation by Payor Mix in Academic Primary Care Clinics

Knowledge gaps in understanding the metabolic and clinical effects of excess folates/folic acid: a summary, and perspectives, from an NIH workshop

Functional Architectures of Local and Distal Regulation of Gene Expression in Multiple Human Tissues

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