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Metabolomics and proteomics reveal impacts of chemically mediated competition on marine plankton

Proceedings of the National Academy of Sciences - PNAS, 2014-06, Vol.111 (24), p.9009-9014

2014

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Survey of metaproteomics software tools for functional microbiome analysis

PloS one, 2020-11, Vol.15 (11), p.e0241503-e0241503

2020

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Shotgun proteomics reveals physiological response to ocean acidification in Crassostrea gigas

BMC genomics, 2014-11, Vol.15 (1), p.951-951, Article 951

2014

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Physiological and molecular responses of lobe coral indicate nearshore adaptations to anthropogenic stressors

Scientific reports, 2021-02, Vol.11 (1), p.3423-11, Article 3423

2021

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Comparative metaproteomics reveals ocean-scale shifts in microbial nutrient utilization and energy transduction

The ISME Journal, 2010-05, Vol.4 (5), p.673-685

2010

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Diatom proteomics reveals unique acclimation strategies to mitigate Fe limitation

PloS one, 2013-10, Vol.8 (10), p.e75653-e75653

2013

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Sulfur oxidizers dominate carbon fixation at a biogeochemical hot spot in the dark ocean

The ISME Journal, 2013-12, Vol.7 (12), p.2349-2360

2013

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MetaGOmics: A Web-Based Tool for Peptide-Centric Functional and Taxonomic Analysis of Metaproteomics Data

Proteomes, 2017-12, Vol.6 (1), p.2

2017

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Bacterial Quorum-Sensing Signal Arrests Phytoplankton Cell Division and Impacts Virus-Induced Mortality

mSphere, 2021-05, Vol.6 (3)

2021

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Shotgun Proteomics Identifies Active Metabolic Pathways in Bleached Coral Tissue and Intraskeletal Compartments

Frontiers in Marine Science, 2022-02, Vol.9

2022

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Coupled microbiome analyses highlights relative functional roles of bacteria in a bivalve hatchery

Environmental microbiome, 2021-03, Vol.16 (1), p.7-12, Article 7

2021

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Disseminating Metaproteomic Informatics Capabilities and Knowledge Using the Galaxy-P Framework

Proteomes, 2018-01, Vol.6 (1), p.7

2018

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Removal of Exogenous Stimuli Reveals a Canalization of Circadian Physiology in a Vertically Migrating Copepod

Journal of proteome research, 2024-06, Vol.23 (6), p.2112-2123

2024

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Acquisition of Iron by Alkaliphilic Bacillus Species

Applied and Environmental Microbiology, 2010-10, Vol.76 (20), p.6955-6961

2010

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Subcellular proteomics for determining iron‐limited remodeling of plastids in the model diatom Thalassiosira pseudonana (Bacillariophyta)

Journal of phycology, 2023-10, Vol.59 (5), p.1085-1099

2023

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Diel metabolic patterns revealed by in situ transcriptome and proteome in a vertically migratory copepod

Molecular ecology, 2024-03, Vol.33 (6), p.e17284-n/a

2024

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Microbial metabolism and adaptations in Atribacteria‐dominated methane hydrate sediments

Environmental microbiology, 2021-08, Vol.23 (8), p.4646-4660

2021

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Critical decisions in metaproteomics: achieving high confidence protein annotations in a sea of unknowns

The ISME Journal, 2017-02, Vol.11 (2), p.309-314

2017

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Tandem Mass Spectrometry Investigation of ADP-ribosylated Kemptide

Journal of the American Society for Mass Spectrometry, 2009-03, Vol.20 (3), p.477-483

2009

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Assessing Protein Sequence Database Suitability Using De Novo Sequencing

Molecular & cellular proteomics, 2020-01, Vol.19 (1), p.198-208

2020

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Subzero, saline incubations of Colwellia psychrerythraea reveal strategies and biomarkers for sustained life in extreme icy environments

Environmental microbiology, 2021-07, Vol.23 (7), p.3840-3866

2021

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The path to preservation: Using proteomics to decipher the fate of diatom proteins during microbial degradation

Limnology and oceanography, 2010-07, Vol.55 (4), p.1790-1804

2010

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Metaproteomics reveal that rapid perturbations in organic matter prioritize functional restructuring over taxonomy in western Arctic Ocean microbiomes

The ISME Journal, 2020-01, Vol.14 (1), p.39-52

2020

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The ongoing need for rates: can physiology and omics come together to co-design the measurements needed to understand complex ocean biogeochemistry?

Journal of plankton research, 2022-07, Vol.44 (4), p.485-495

2022

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What is the oxygen exposure time of laterally transported organic matter along the Washington margin?

Marine chemistry, 2004-12, Vol.92 (1), p.157-165

2004

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Metabolomics and proteomics reveal impacts of chemically mediated competition on marine plankton

Survey of metaproteomics software tools for functional microbiome analysis

Shotgun proteomics reveals physiological response to ocean acidification in Crassostrea gigas

Physiological and molecular responses of lobe coral indicate nearshore adaptations to anthropogenic stressors

Comparative metaproteomics reveals ocean-scale shifts in microbial nutrient utilization and energy transduction

Diatom proteomics reveals unique acclimation strategies to mitigate Fe limitation

Sulfur oxidizers dominate carbon fixation at a biogeochemical hot spot in the dark ocean

MetaGOmics: A Web-Based Tool for Peptide-Centric Functional and Taxonomic Analysis of Metaproteomics Data

Bacterial Quorum-Sensing Signal Arrests Phytoplankton Cell Division and Impacts Virus-Induced Mortality

Shotgun Proteomics Identifies Active Metabolic Pathways in Bleached Coral Tissue and Intraskeletal Compartments

Coupled microbiome analyses highlights relative functional roles of bacteria in a bivalve hatchery

Disseminating Metaproteomic Informatics Capabilities and Knowledge Using the Galaxy-P Framework

Removal of Exogenous Stimuli Reveals a Canalization of Circadian Physiology in a Vertically Migrating Copepod

Acquisition of Iron by Alkaliphilic Bacillus Species

Subcellular proteomics for determining iron‐limited remodeling of plastids in the model diatom Thalassiosira pseudonana (Bacillariophyta)

Diel metabolic patterns revealed by in situ transcriptome and proteome in a vertically migratory copepod

Microbial metabolism and adaptations in Atribacteria‐dominated methane hydrate sediments

Critical decisions in metaproteomics: achieving high confidence protein annotations in a sea of unknowns

Tandem Mass Spectrometry Investigation of ADP-ribosylated Kemptide

Assessing Protein Sequence Database Suitability Using De Novo Sequencing

Subzero, saline incubations of Colwellia psychrerythraea reveal strategies and biomarkers for sustained life in extreme icy environments

The path to preservation: Using proteomics to decipher the fate of diatom proteins during microbial degradation

Metaproteomics reveal that rapid perturbations in organic matter prioritize functional restructuring over taxonomy in western Arctic Ocean microbiomes

The ongoing need for rates: can physiology and omics come together to co-design the measurements needed to understand complex ocean biogeochemistry?

What is the oxygen exposure time of laterally transported organic matter along the Washington margin?

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