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Peptides and proteins in membranes: what can we learn via computer simulations?

Current medicinal chemistry, 2004-09, Vol.11 (18), p.2421-2442

2004

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Three-dimensional structure of binase in solution

FEBS letters, 1998-07, Vol.431 (2), p.250-254

1998

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Lateral clustering of lipids in hydrated bilayers composed of dioleoylphosphatidylcholine and dipalmitoylphosphatidylcholine

Biochemistry (Moscow). Supplement series A, Membrane and cell biology, 2011-09, Vol.5 (3), p.278-285

2011

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A Solvent Model for Simulations of Peptides in Bilayers. I. Membrane-Promoting α-Helix Formation

Biophysical journal, 1999-05, Vol.76 (5), p.2448-2459

1999

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Factors important for fusogenic activity of peptides: molecular modeling study of analogs of fusion peptide of influenza virus hemagglutinin

FEBS letters, 1999-11, Vol.462 (1), p.205-210

1999

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A Solvent Model for Simulations of Peptides in Bilayers. II. Membrane-Spanning α-Helices

Biophysical journal, 1999-05, Vol.76 (5), p.2460-2471

1999

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Toxic principle of selva ant venom is a pore-forming protein transformer

FEBS letters, 1994-06, Vol.347 (2), p.112-116

1994

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Three-Dimensional Structure of Toxin OSK1 from Orthochirus scrobiculosus Scorpion Venom

Biochemistry (Easton), 1997-02, Vol.36 (6), p.1223-1232

1997

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Processing of heteronuclear NMR relaxation data with the new software DASHA

Applied magnetic resonance, 1995-07, Vol.9 (4), p.581-588

1995

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Role of Lipid Charge in Organization of Water/Lipid Bilayer Interface: Insights via Computer Simulations

The journal of physical chemistry. B, 2005-08, Vol.109 (31), p.15052-15059

2005

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Atomic Solvation Parameters for Proteins in a Membrane Environment. Application to Transmembrane α-Helices

Journal of biomolecular structure & dynamics, 1997-08, Vol.15 (1), p.1-18

1997

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Modeling of peptides and proteins in a membrane environment: I. A solvation model mimicking a lipid bilayer

Russian journal of bioorganic chemistry, 2000, Vol.26 (2), p.115-124

2000

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Modeling of peptides and proteins in a membrane environment: II. Structural and energetic aspects of glycophorin A in a lipid bilayer

Russian journal of bioorganic chemistry, 2000, Vol.26 (3), p.143-151

2000

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Interaction of Cardiotoxins with Membranes: A Molecular Modeling Study

Biophysical journal, 2002-07, Vol.83 (1), p.144-153

2002

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Molecular modelling of the nucleotide-binding domain of Wilson's disease protein: location of the ATP-binding site, domain dynamics and potential effects of the major disease mutations

Biochemical journal, 2004-08, Vol.382 (Pt 1), p.293-305

2004

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Association of transmembrane helices: what determines assembling of a dimer?

Journal of computer-aided molecular design, 2006-01, Vol.20 (1), p.27-45

2006

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Helix Interactions in Membranes: Lessons from Unrestrained Monte Carlo Simulations

Journal of chemical theory and computation, 2005-11, Vol.1 (6), p.1252-1264

2005

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Three‐dimensional structure of proteolytic fragment 163–231 of bacterioopsin determined from nuclear magnetic resonance data in solution

European journal of biochemistry, 1992-06, Vol.206 (3), p.665-672

1992

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Modeling of peptides and proteins in membrane environment. I. A solvation model mimicking a lipid bilayer

Bioorganicheskaia khimiia, 2000-02, Vol.26 (2), p.130

2000

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Solution of the spatial structure of dimeric transmembrane domains of proteins by heteronuclear NMR spectroscopy and molecular modeling

Biophysics (Oxford), 2006-02, Vol.51 (S1), p.23-27

2006

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Monte Carlo simulations of voltage-driven translocation of a signal sequence

FEBS letters, 2002-08, Vol.526 (1), p.97-100

2002

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Three-dimensional structure of ectatomin from Ectatomma tuberculatum ant venom

Journal of biomolecular NMR, 1995, Vol.5 (1), p.1-13

1995

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Assessment of conformation and energetics of the N-terminal part of elafin via computer simulations

Theoretical chemistry accounts, 2001-06, Vol.106 (1-2), p.55-61

2001

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Peptides in membranes: assessment of environmental effects via simulations using an implicit solvation model

Theoretical chemistry accounts, 1999-02, Vol.101 (1-3), p.170-174

1999

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Modeling of Peptides in Implicit Membrane-Mimetic Media

Molecular simulation, 2000-08, Vol.24 (4-6), p.275-291

2000

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Peptides and proteins in membranes: what can we learn via computer simulations?

Three-dimensional structure of binase in solution

Lateral clustering of lipids in hydrated bilayers composed of dioleoylphosphatidylcholine and dipalmitoylphosphatidylcholine

A Solvent Model for Simulations of Peptides in Bilayers. I. Membrane-Promoting α-Helix Formation

Factors important for fusogenic activity of peptides: molecular modeling study of analogs of fusion peptide of influenza virus hemagglutinin

A Solvent Model for Simulations of Peptides in Bilayers. II. Membrane-Spanning α-Helices

Toxic principle of selva ant venom is a pore-forming protein transformer

Three-Dimensional Structure of Toxin OSK1 from Orthochirus scrobiculosus Scorpion Venom

Processing of heteronuclear NMR relaxation data with the new software DASHA

Role of Lipid Charge in Organization of Water/Lipid Bilayer Interface: Insights via Computer Simulations

Atomic Solvation Parameters for Proteins in a Membrane Environment. Application to Transmembrane α-Helices

Modeling of peptides and proteins in a membrane environment: I. A solvation model mimicking a lipid bilayer

Modeling of peptides and proteins in a membrane environment: II. Structural and energetic aspects of glycophorin A in a lipid bilayer

Interaction of Cardiotoxins with Membranes: A Molecular Modeling Study

Molecular modelling of the nucleotide-binding domain of Wilson's disease protein: location of the ATP-binding site, domain dynamics and potential effects of the major disease mutations

Association of transmembrane helices: what determines assembling of a dimer?

Helix Interactions in Membranes: Lessons from Unrestrained Monte Carlo Simulations

Three‐dimensional structure of proteolytic fragment 163–231 of bacterioopsin determined from nuclear magnetic resonance data in solution

Modeling of peptides and proteins in membrane environment. I. A solvation model mimicking a lipid bilayer

Solution of the spatial structure of dimeric transmembrane domains of proteins by heteronuclear NMR spectroscopy and molecular modeling

Monte Carlo simulations of voltage-driven translocation of a signal sequence

Three-dimensional structure of ectatomin from Ectatomma tuberculatum ant venom

Assessment of conformation and energetics of the N-terminal part of elafin via computer simulations

Peptides in membranes: assessment of environmental effects via simulations using an implicit solvation model

Modeling of Peptides in Implicit Membrane-Mimetic Media

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