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DECIPHER, a Search-Based Approach to Chimera Identification for 16S rRNA Sequences

Applied and Environmental Microbiology, 2012-02, Vol.78 (3), p.717-725

2012

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Metabolic network analysis reveals microbial community interactions in anammox granules

Nature communications, 2017-05, Vol.8 (1), p.15416-12, Article 15416

2017

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Adsorption of Cu2+ and Zn2+ by extracellular polymeric substances (EPS) in different sludges: Effect of EPS fractional polarity on binding mechanism

Journal of hazardous materials, 2017-01, Vol.321, p.473-483

2017

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Design and Assessment of Species-Level qPCR Primers Targeting Comammox

Frontiers in microbiology, 2019, Vol.10, p.36-36

2019

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The essential Rhodobacter sphaeroides CenKR two-component system regulates cell division and envelope biosynthesis

PLoS genetics, 2022-06, Vol.18 (6), p.e1010270

2022

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mathFISH, a Web Tool That Uses Thermodynamics-Based Mathematical Models for In Silico Evaluation of Oligonucleotide Probes for Fluorescence In Situ Hybridization

Applied and Environmental Microbiology, 2011-02, Vol.77 (3), p.1118-1122

2011

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Whole-Community Metagenomics in Two Different Anammox Configurations: Process Performance and Community Structure

Environmental science & technology, 2017-04, Vol.51 (8), p.4317-4327

2017

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Global analysis of photosynthesis transcriptional regulatory networks

PLoS genetics, 2014-12, Vol.10 (12), p.e1004837-e1004837

2014

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Evaluating the effect of dissolved oxygen on ammonia-oxidizing bacterial communities in activated sludge

Water research (Oxford), 2004-08, Vol.38 (14), p.3275-3286

2004

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An integrated approach to reconstructing genome-scale transcriptional regulatory networks

PLoS computational biology, 2015-02, Vol.11 (2), p.e1004103-e1004103

2015

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A previously uncharacterized divisome-associated lipoprotein, DalA, is needed for normal cell division in Rhodobacterales

mBio, 2023-08, Vol.14 (4), p.e0120323-e0120323

2023

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Catabolism of β-5 linked aromatics by Novosphingobium aromaticivorans

mBio, 2024-07, Vol.15 (8), p.e0171824

2024

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The role of CenKR in the coordination of Rhodobacter sphaeroides cell elongation and division

mBio, 2023-06, Vol.14 (4), p.e0063123-e0063123

2023

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Pilot-scale comparison of biological nutrient removal (BNR) using intermittent and continuous ammonia-based low dissolved oxygen aeration control systems

Water science and technology, 2022-01, Vol.85 (2), p.578-590

2022

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Community Assembly and Ecology of Activated Sludge under Photosynthetic Feast–Famine Conditions

Environmental science & technology, 2017-03, Vol.51 (6), p.3165-3175

2017

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Metatranscriptomic and Thermodynamic Insights into Medium-Chain Fatty Acid Production Using an Anaerobic Microbiome

mSystems, 2018-11, Vol.3 (6)

2018

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Global insights into energetic and metabolic networks in Rhodobacter sphaeroides

BMC systems biology, 2013-09, Vol.7 (1), p.89-89, Article 89

2013

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Denitrification capabilities of two biological phosphorus removal sludges dominated by different 'Candidatus Accumulibacter' clades

Environmental microbiology reports, 2009-12, Vol.1 (6), p.583-588

2009

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The NtrYX Two-Component System Regulates the Bacterial Cell Envelope

mBio, 2020-05, Vol.11 (3)

2020

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Nitrite concentration influences the population structure of Nitrospira-like bacteria

Environmental microbiology, 2006-08, Vol.8 (8), p.1487-1495

2006

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Quantification of Target Molecules Needed To Detect Microorganisms by Fluorescence In Situ Hybridization (FISH) and Catalyzed Reporter Deposition-FISH

Applied and Environmental Microbiology, 2008-08, Vol.74 (16), p.5068-5077

2008

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Integrated Omic Analyses Provide Evidence that a " Candidatus Accumulibacter phosphatis" Strain Performs Denitrification under Microaerobic Conditions

mSystems, 2019-01, Vol.4 (1)

2019

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Autotrophic and mixotrophic metabolism of an anammox bacterium revealed by in vivo 13C and 2H metabolic network mapping

The ISME Journal, 2021-03, Vol.15 (3), p.673-687

2021

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Biochemical transformation of lignin for deriving valued commodities from lignocellulose

Current opinion in biotechnology, 2017-06, Vol.45 (C), p.120-126

2017

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Diagnosing and Predicting Mixed-Culture Fermentations with Unicellular and Guild-Based Metabolic Models

mSystems, 2020-10, Vol.5 (5)

2020

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DECIPHER, a Search-Based Approach to Chimera Identification for 16S rRNA Sequences

Metabolic network analysis reveals microbial community interactions in anammox granules

Adsorption of Cu2+ and Zn2+ by extracellular polymeric substances (EPS) in different sludges: Effect of EPS fractional polarity on binding mechanism

Design and Assessment of Species-Level qPCR Primers Targeting Comammox

The essential Rhodobacter sphaeroides CenKR two-component system regulates cell division and envelope biosynthesis

mathFISH, a Web Tool That Uses Thermodynamics-Based Mathematical Models for In Silico Evaluation of Oligonucleotide Probes for Fluorescence In Situ Hybridization

Whole-Community Metagenomics in Two Different Anammox Configurations: Process Performance and Community Structure

Global analysis of photosynthesis transcriptional regulatory networks

Evaluating the effect of dissolved oxygen on ammonia-oxidizing bacterial communities in activated sludge

An integrated approach to reconstructing genome-scale transcriptional regulatory networks

A previously uncharacterized divisome-associated lipoprotein, DalA, is needed for normal cell division in Rhodobacterales

Catabolism of β-5 linked aromatics by Novosphingobium aromaticivorans

The role of CenKR in the coordination of Rhodobacter sphaeroides cell elongation and division

Pilot-scale comparison of biological nutrient removal (BNR) using intermittent and continuous ammonia-based low dissolved oxygen aeration control systems

Community Assembly and Ecology of Activated Sludge under Photosynthetic Feast–Famine Conditions

Metatranscriptomic and Thermodynamic Insights into Medium-Chain Fatty Acid Production Using an Anaerobic Microbiome

Global insights into energetic and metabolic networks in Rhodobacter sphaeroides

Denitrification capabilities of two biological phosphorus removal sludges dominated by different 'Candidatus Accumulibacter' clades

The NtrYX Two-Component System Regulates the Bacterial Cell Envelope

Nitrite concentration influences the population structure of Nitrospira-like bacteria

Quantification of Target Molecules Needed To Detect Microorganisms by Fluorescence In Situ Hybridization (FISH) and Catalyzed Reporter Deposition-FISH

Integrated Omic Analyses Provide Evidence that a " Candidatus Accumulibacter phosphatis" Strain Performs Denitrification under Microaerobic Conditions

Autotrophic and mixotrophic metabolism of an anammox bacterium revealed by in vivo 13C and 2H metabolic network mapping

Biochemical transformation of lignin for deriving valued commodities from lignocellulose

Diagnosing and Predicting Mixed-Culture Fermentations with Unicellular and Guild-Based Metabolic Models

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