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Global identification of microRNA-target RNA pairs by parallel analysis of RNA ends

Nature biotechnology, 2008-08, Vol.26 (8), p.941-946

2008

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Plant MPSS databases: signature-based transcriptional resources for analyses of mRNA and small RNA

Nucleic acids research, 2006-01, Vol.34 (Database issue), p.D731-D735

2006

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Distinct Size Distribution of Endogenous siRNAs in Maize: Evidence from Deep Sequencing in the mop1-1 Mutant

Proceedings of the National Academy of Sciences - PNAS, 2008-09, Vol.105 (39), p.14958-14963

2008

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Genome-wide analysis for discovery of rice microRNAs reveals natural antisense microRNAs (nat-miRNAs)

Proceedings of the National Academy of Sciences - PNAS, 2008-03, Vol.105 (12), p.4951-4956

2008

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expression atlas of rice mRNAs and small RNAs

Nature biotechnology, 2007-04, Vol.25 (4), p.473-477

2007

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Transcriptome dynamics through alternative polyadenylation in developmental and environmental responses in plants revealed by deep sequencing

Genome research, 2011-09, Vol.21 (9), p.1478-1486

2011

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A genome-wide survey of highly expressed non-coding RNAs and biological validation of selected candidates in Agrobacterium tumefaciens

PloS one, 2013-08, Vol.8 (8), p.e70720-e70720

2013

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RNA-mediated trans-communication can establish paramutation at the b1 locus in maize

Proceedings of the National Academy of Sciences - PNAS, 2010-07, Vol.107 (29), p.12986-12991

2010

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Deep sequencing reveals the complex and coordinated transcriptional regulation of genes related to grain quality in rice cultivars

BMC genomics, 2011-04, Vol.12 (1), p.190-190, Article 190

2011

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The Functional Role of Pack-MULEs in Rice Inferred from Purifying Selection and Expression Profile

The Plant cell, 2009-01, Vol.21 (1), p.25-38

2009

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Convergent evolution of disease resistance gene specificity in two flowering plant families

The Plant cell, 2004-02, Vol.16 (2), p.309-318

2004

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Genomic and Genetic Characterization of Rice Cen3 Reveals Extensive Transcription and Evolutionary Implications of a Complex Centromere

The Plant cell, 2006-09, Vol.18 (9), p.2123-2133

2006

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Identification of Candidate Genes Associated with Positive and Negative Heterosis in Rice

PloS one, 2014-04, Vol.9 (4), p.e95178-e95178

2014

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Deep and comparative analysis of the mycelium and appressorium transcriptomes of Magnaporthe grisea using MPSS, RL-SAGE, and oligoarray methods

BMC genomics, 2006-12, Vol.7 (1), p.310-310, Article 310

2006

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Characterization of paralogous protein families in rice

BMC plant biology, 2008-02, Vol.8 (1), p.18-18, Article 18

2008

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Deep Transcriptome Sequencing Reveals the Expression of Key Functional and Regulatory Genes Involved in the Abiotic Stress Signaling Pathways in Rice

Journal of Plant Biology(한국식물학회지), 2013, 56(4), , pp.216-231

2013

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Comparative expression profiling in grape (Vitis vinifera) berries derived from frequency analysis of ESTs and MPSS signatures

BMC plant biology, 2008-05, Vol.8 (1), p.53-53, Article 53

2008

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Diversification of non-TIR class NB-LRR genes in relation to whole-genome duplication events in Arabidopsis

Molecular plant-microbe interactions, 2005-02, Vol.18 (2), p.103-109

2005

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Pseudomonas versus Arabidopsis: Models for Genomic Research into Plant Disease Resistance

Bioscience, 2005-08, Vol.55 (8), p.679-686

2005

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Bioinformatics analysis of small RNAs in plants using next generation sequencing technologies

Methods in molecular biology (Clifton, N.J.), 2010-01, Vol.592, p.89

2010

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Transcriptional analysis of the Arabidopsis ovule by massively parallel signature sequencing

Journal of experimental botany, 2012-06, Vol.63 (10), p.3829-3842

2012

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Methods for analysis of gene expression in plants using MPSS

Methods in molecular biology (Clifton, N.J.), 2007, Vol.406, p.387

2007

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Transcriptional analysis of theArabidopsisovule by massively parallel signature sequencing

Journal of experimental botany, 2012-01, Vol.63 (10), p.3829-3842

2012

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A Genome-Wide Survey of Highly Expressed Non-Coding RNAs and Biological Validation of Selected Candidates in Agrobacterium tumefaciens. e70720

PloS one, 2013-08, Vol.8 (8)

2013

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Identification of Candidate Genes Associated with Positive and Negative Heterosis in Rice: e95178

PloS one, 2014-04, Vol.9 (4)

2014

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Global identification of microRNA-target RNA pairs by parallel analysis of RNA ends

Plant MPSS databases: signature-based transcriptional resources for analyses of mRNA and small RNA

Distinct Size Distribution of Endogenous siRNAs in Maize: Evidence from Deep Sequencing in the mop1-1 Mutant

Genome-wide analysis for discovery of rice microRNAs reveals natural antisense microRNAs (nat-miRNAs)

expression atlas of rice mRNAs and small RNAs

Transcriptome dynamics through alternative polyadenylation in developmental and environmental responses in plants revealed by deep sequencing

A genome-wide survey of highly expressed non-coding RNAs and biological validation of selected candidates in Agrobacterium tumefaciens

RNA-mediated trans-communication can establish paramutation at the b1 locus in maize

Deep sequencing reveals the complex and coordinated transcriptional regulation of genes related to grain quality in rice cultivars

The Functional Role of Pack-MULEs in Rice Inferred from Purifying Selection and Expression Profile

Convergent evolution of disease resistance gene specificity in two flowering plant families

Genomic and Genetic Characterization of Rice Cen3 Reveals Extensive Transcription and Evolutionary Implications of a Complex Centromere

Identification of Candidate Genes Associated with Positive and Negative Heterosis in Rice

Deep and comparative analysis of the mycelium and appressorium transcriptomes of Magnaporthe grisea using MPSS, RL-SAGE, and oligoarray methods

Characterization of paralogous protein families in rice

Deep Transcriptome Sequencing Reveals the Expression of Key Functional and Regulatory Genes Involved in the Abiotic Stress Signaling Pathways in Rice

Comparative expression profiling in grape (Vitis vinifera) berries derived from frequency analysis of ESTs and MPSS signatures

Diversification of non-TIR class NB-LRR genes in relation to whole-genome duplication events in Arabidopsis

Pseudomonas versus Arabidopsis: Models for Genomic Research into Plant Disease Resistance

Bioinformatics analysis of small RNAs in plants using next generation sequencing technologies

Transcriptional analysis of the Arabidopsis ovule by massively parallel signature sequencing

Methods for analysis of gene expression in plants using MPSS

Transcriptional analysis of theArabidopsisovule by massively parallel signature sequencing

A Genome-Wide Survey of Highly Expressed Non-Coding RNAs and Biological Validation of Selected Candidates in Agrobacterium tumefaciens. e70720

Identification of Candidate Genes Associated with Positive and Negative Heterosis in Rice: e95178

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