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Snake cube puzzle and protein folding

Biophysics and Physicobiology, 2019, Vol.16, pp.256-263

Go, Nobuhiro

2019

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Detection of pockets on protein surfaces using small and large probe spheres to find putative ligand binding sites

Proteins, structure, function, and bioinformatics, 2007-08, Vol.68 (2), p.516-529

2007

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Amino acid residue doublet propensity in the protein-RNA interface and its application to RNA interface prediction

Nucleic acids research, 2006-12, Vol.34 (22), p.6450-6460

2006

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Energy landscape of a native protein: Jumping-among-minima model

Proteins, structure, function, and bioinformatics, 1998-12, Vol.33 (4), p.496-517

1998

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Ligand-Induced Protein Responses and Mechanical Signal Propagation Described by Linear Response Theories

Biophysical journal, 2014-09, Vol.107 (6), p.1415-1425

2014

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Switch Interactions Control Energy Frustration and Multiple Flagellar Filament Structures

Proceedings of the National Academy of Sciences - PNAS, 2006-03, Vol.103 (13), p.4894-4899

2006

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BAAQ: An Infrastructure for Application Integration and Knowledge Discovery in Bioinformatics

IEEE journal of biomedical and health informatics, 2007-07, Vol.11 (4), p.428-434

2007

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Novel types of two-domain multi-copper oxidases: possible missing links in the evolution

FEBS letters, 2003-10, Vol.553 (3), p.239-244

2003

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Collective variable description of native protein dynamics

Annual review of physical chemistry, 1995, Vol.46 (1), p.223-250

1995

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High-speed classification of coherent X-ray diffraction patterns on the K computer for high-resolution single biomolecule imaging

Journal of synchrotron radiation, 2013-11, Vol.20 (6), p.899-904

2013

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Enhanced resolution of molecular recognition to distinguish structurally similar molecules by different conformational responses of a protein upon ligand binding

Journal of structural biology, 2011, Vol.173 (1), p.20-28

2011

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Protein Boson Peak Originated from Hydration-Related Multiple Minima Energy Landscape

Journal of the American Chemical Society, 2005-06, Vol.127 (24), p.8705-8709

2005

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Physics and Biology of Protein

Progress of theoretical physics. Supplement, 2007-01, Vol.170, p.198-213

Go, Nobuhiro

2007

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Sequence-dependent DNA deformability studied using molecular dynamics simulations

Nucleic acids research, 2007-09, Vol.35 (18), p.6063-6074

2007

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Structural motif of phosphate-binding site common to various protein superfamilies: all-against-all structural comparison of protein–mononucleotide complexes

Protein engineering, 1999-01, Vol.12 (1), p.11-14

1999

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Classifying and assembling two-dimensional X-ray laser diffraction patterns of a single particle to reconstruct the three-dimensional diffraction intensity function: resolution limit due to the quantum noise

Acta crystallographica. Section A, Foundations of crystallography, 2012-05, Vol.68 (3), p.366-381

2012

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Dynamic properties of double-stranded DNA by normal mode analysis

The Journal of chemical physics, 1999-06, Vol.110 (22), p.11070-11075

1999

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Hydration-coupled protein boson peak measured by incoherent neutron scattering

Physica. B, Condensed matter, 2006-11, Vol.385, p.871-873

2006

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Investigating protein dynamics in collective coordinate space

Current opinion in structural biology, 1999-04, Vol.9 (2), p.164-169

1999

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Protein structures in solution by nuclear magnetic resonance and distance geometry: The polypeptide fold of the basic pancreatic trypsin inhibitor determined using two different algorithms, DISGEO and DISMAN

Journal of molecular biology, 1987-08, Vol.196 (3), p.611-639

1987

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Finding evolutionary relations beyond superfamilies: Fold‐based superfamilies

Protein science, 2003-10, Vol.12 (10), p.2239-2251

2003

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Seeking significance in three-dimensional protein structure comparisons

Current opinion in structural biology, 1995-06, Vol.5 (3), p.377-382

1995

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Normal mode analysis of a double-stranded DNA dodecamer d(CGCGAATTCGCG)

The Journal of chemical physics, 1997-09, Vol.107 (9), p.3684-3690

1997

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Intensity of Diffracted X-rays from Biomolecules with Radiation Damage Caused by Strong X-ray Pulses

Journal of the Physical Society of Japan, 2014-09, Vol.83 (9), p.94301

2014

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1P047 Analysis of the dynamics of RuvA-RuvB-Holliday junction DNA complex studied by molecular dynamics simulation(1. Protein structure and dynamics (I),Poster Session,Abstract,Meeting Program of EABS & BSJ 2006)

Seibutsu Butsuri, 2006/10/01, Vol.46(supplement2), pp.S158

2006

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Snake cube puzzle and protein folding

Detection of pockets on protein surfaces using small and large probe spheres to find putative ligand binding sites

Amino acid residue doublet propensity in the protein-RNA interface and its application to RNA interface prediction

Energy landscape of a native protein: Jumping-among-minima model

Ligand-Induced Protein Responses and Mechanical Signal Propagation Described by Linear Response Theories

Switch Interactions Control Energy Frustration and Multiple Flagellar Filament Structures

BAAQ: An Infrastructure for Application Integration and Knowledge Discovery in Bioinformatics

Novel types of two-domain multi-copper oxidases: possible missing links in the evolution

Collective variable description of native protein dynamics

High-speed classification of coherent X-ray diffraction patterns on the K computer for high-resolution single biomolecule imaging

Enhanced resolution of molecular recognition to distinguish structurally similar molecules by different conformational responses of a protein upon ligand binding

Protein Boson Peak Originated from Hydration-Related Multiple Minima Energy Landscape

Physics and Biology of Protein

Sequence-dependent DNA deformability studied using molecular dynamics simulations

Structural motif of phosphate-binding site common to various protein superfamilies: all-against-all structural comparison of protein–mononucleotide complexes

Classifying and assembling two-dimensional X-ray laser diffraction patterns of a single particle to reconstruct the three-dimensional diffraction intensity function: resolution limit due to the quantum noise

Dynamic properties of double-stranded DNA by normal mode analysis

Hydration-coupled protein boson peak measured by incoherent neutron scattering

Investigating protein dynamics in collective coordinate space

Protein structures in solution by nuclear magnetic resonance and distance geometry: The polypeptide fold of the basic pancreatic trypsin inhibitor determined using two different algorithms, DISGEO and DISMAN

Finding evolutionary relations beyond superfamilies: Fold‐based superfamilies

Seeking significance in three-dimensional protein structure comparisons

Normal mode analysis of a double-stranded DNA dodecamer d(CGCGAATTCGCG)

Intensity of Diffracted X-rays from Biomolecules with Radiation Damage Caused by Strong X-ray Pulses

1P047 Analysis of the dynamics of RuvA-RuvB-Holliday junction DNA complex studied by molecular dynamics simulation(1. Protein structure and dynamics (I),Poster Session,Abstract,Meeting Program of EABS & BSJ 2006)

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