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Comparative Simulations of the Ground State and the M-Intermediate State of the Sensory Rhodopsin II–Transducer Complex with a HAMP Domain Model

Biochemistry (Easton), 2012-07, Vol.51 (30), p.5958-5966

2012

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DNA hypermethyation and silencing of PITX1 correlated with advanced stage and poor postoperative prognosis of esophageal squamous cell carcinoma

Oncotarget, 2017-10, Vol.8 (48), p.84434-84448

2017

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PromoterCAD: Data-driven design of plant regulatory DNA

Nucleic acids research, 2013-07, Vol.41 (Web Server issue), p.W569-W574

2013

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PosMed: Ranking genes and bioresources based on Semantic Web Association Study

Nucleic acids research, 2013-07, Vol.41 (Web Server issue), p.W109-W114

2013

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2P329 Molecular Dynamics Study of Sensory Rhodopsin II Complex with Cognate Transducer(42. Sensory signal transduction,Poster Session,Abstract,Meeting Program of EABS & BSJ 2006)

Seibutsu Butsuri, 2006/10/01, Vol.46(supplement2), pp.S378

2006

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Database Construction for PromoterCAD: Synthetic Promoter Design for Mammals and Plants

ACS synthetic biology, 2014-03, Vol.3 (3), p.192-196

2014

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Integrated database of information from structural genomics experiments

Acta crystallographica. Section D, Biological crystallography., 2013-05, Vol.69 (5), p.914-919

2013

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1F1534 センサリーロドプシンII-トランスデューサー複合体の比較シミュレーションにより明らかにされた基底状態とM中間体の差異(光生物-視覚,光受容I,口頭発表,日本生物物理学会第50回年会(2012年度))

生物物理, 2012/08/15, Vol.52(supplement), pp.S30

2012

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1F1534 Differences between the ground state and the M-intermediate of Sensory Rhodopsin II-Transducer complex revealed by comparative simulations(Photobiology: Vision & Photoreception I,Oral Presentation,The 50th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri, 2012/08/15, Vol.52(supplement), pp.S30

2012

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The RIKEN integrated database of mammals

Nucleic acids research, 2011-01, Vol.39 (Database issue), p.D861-D870

2011

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1B1624 Molecular dynamics simulations of SRII-HtrII complex with a modeled HAMP domain(Membrane Proteins 1,The 49th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri, 2011/08/15, Vol.51(supplement), pp.S33

2011

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1B1624 HAMPドメインの分子モデルを結合したSRII-HtrII複合体の分子動力学シミュレーション(膜蛋白質1,第49回日本生物物理学会年会)

生物物理, 2011/08/15, Vol.51(supplement), pp.S33

2011

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Molecular modeling of the HAMP domain of sensory rhodopsin II transducer from Natronomonas pharaonis

BIOPHYSICS, 2010, Vol.6, pp.27-36

2010

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3P265 人工プロモーター設計WebアプリケーションPromoterCADのためのデータベース構築(22C.生命情報科学:比較ゲノミクス,ポスター,日本生物物理学会年会第51回(2013年度))

生物物理, 2013/09/13, Vol.53(supplement1-2), pp.S255

2013

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3P265 Database Construction for Synthetic Promoter Design Web Application(PromoterCAD)(22C. Bioinformatics: Comparative genomics,Poster)

Seibutsu Butsuri, 2013/09/13, Vol.53(supplement1-2), pp.S255

2013

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1P-219 Molecular dynamical analysis of a HAMP domain : A four-helix bundle structure satisfies the data of electron paramagnetic resonance(Photobiology:Vision & Photoreception, The 47th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri, 2009/09/20, Vol.49(supplement), pp.S96

2009

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1TP2-02 Molecular dynamical analysis of a HAMP domain : A four-helix bundle structure satisfies the data of electron paramagnetic resonance(The 47th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri, 2009/09/20, Vol.49(supplement), pp.S32-S33

2009

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1TP2-02 HAMPドメインの分子動力学解析 : 電子スピン常磁性共鳴のデータを満足する4-helix bundle構造(光生物-視覚・光受容,第47回日本生物物理学会年会)

生物物理, 2009/09/20, Vol.49(supplement), pp.S32-S33

2009

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1P-219 HAMPドメインの分子動力学解析 : 電子スピン常磁性共鳴のデータを満足する4-helix bundle構造(光生物-視覚・光受容,第47回日本生物物理学会年会)

生物物理, 2009/09/20, Vol.49(supplement), pp.S96

2009

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1P-264 センサリーロドプシン/トランスデューサー複合体のHAMPドメインのモデル構造 : 分子動力学研究(光生物・視覚,光受容(1),第46回日本生物物理学会年会)

生物物理, 2008/10/25, Vol.48(supplement), pp.S63

2008

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1P-264 The HAMP domain model of sensory rhodopsin / cognate transducer complex : Molecular dynamics study(The 46th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri, 2008/10/25, Vol.48(supplement), pp.S63

2008

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3P239 Molecular Dynamics Study of the HAMP domain of Halobacterial Transducer of Rhodopsin II (HtrII)(Photobiology- vision and photoreception. Actinobiology,Oral Presentations)

Seibutsu Butsuri, 2007/11/20, Vol.47(supplement), pp.S262

2007

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BioLOD.org: ontology-based integration of biological linked open data

Proceedings of the 4th International Workshop on Semantic Web Applications and Tools for the Life Sciences, 2011, p.92-93

2011

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Gateways to the FANTOM5 promoter level mammalian expression atlas

Comparative Simulations of the Ground State and the M-Intermediate State of the Sensory Rhodopsin II–Transducer Complex with a HAMP Domain Model

DNA hypermethyation and silencing of PITX1 correlated with advanced stage and poor postoperative prognosis of esophageal squamous cell carcinoma

PromoterCAD: Data-driven design of plant regulatory DNA

PosMed: Ranking genes and bioresources based on Semantic Web Association Study

2P329 Molecular Dynamics Study of Sensory Rhodopsin II Complex with Cognate Transducer(42. Sensory signal transduction,Poster Session,Abstract,Meeting Program of EABS & BSJ 2006)

Database Construction for PromoterCAD: Synthetic Promoter Design for Mammals and Plants

Integrated database of information from structural genomics experiments

1F1534 センサリーロドプシンII-トランスデューサー複合体の比較シミュレーションにより明らかにされた基底状態とM中間体の差異(光生物-視覚,光受容I,口頭発表,日本生物物理学会第50回年会(2012年度))

1F1534 Differences between the ground state and the M-intermediate of Sensory Rhodopsin II-Transducer complex revealed by comparative simulations(Photobiology: Vision & Photoreception I,Oral Presentation,The 50th Annual Meeting of the Biophysical Society of Japan)

The RIKEN integrated database of mammals

1B1624 Molecular dynamics simulations of SRII-HtrII complex with a modeled HAMP domain(Membrane Proteins 1,The 49th Annual Meeting of the Biophysical Society of Japan)

1B1624 HAMPドメインの分子モデルを結合したSRII-HtrII複合体の分子動力学シミュレーション(膜蛋白質1,第49回日本生物物理学会年会)

Molecular modeling of the HAMP domain of sensory rhodopsin II transducer from Natronomonas pharaonis

3P265 人工プロモーター設計WebアプリケーションPromoterCADのためのデータベース構築(22C.生命情報科学:比較ゲノミクス,ポスター,日本生物物理学会年会第51回(2013年度))

3P265 Database Construction for Synthetic Promoter Design Web Application(PromoterCAD)(22C. Bioinformatics: Comparative genomics,Poster)

1P-219 Molecular dynamical analysis of a HAMP domain : A four-helix bundle structure satisfies the data of electron paramagnetic resonance(Photobiology:Vision & Photoreception, The 47th Annual Meeting of the Biophysical Society of Japan)

1TP2-02 Molecular dynamical analysis of a HAMP domain : A four-helix bundle structure satisfies the data of electron paramagnetic resonance(The 47th Annual Meeting of the Biophysical Society of Japan)

1TP2-02 HAMPドメインの分子動力学解析 : 電子スピン常磁性共鳴のデータを満足する4-helix bundle構造(光生物-視覚・光受容,第47回日本生物物理学会年会)

1P-219 HAMPドメインの分子動力学解析 : 電子スピン常磁性共鳴のデータを満足する4-helix bundle構造(光生物-視覚・光受容,第47回日本生物物理学会年会)

1P-264 センサリーロドプシン/トランスデューサー複合体のHAMPドメインのモデル構造 : 分子動力学研究(光生物・視覚,光受容(1),第46回日本生物物理学会年会)

1P-264 The HAMP domain model of sensory rhodopsin / cognate transducer complex : Molecular dynamics study(The 46th Annual Meeting of the Biophysical Society of Japan)

3P239 Molecular Dynamics Study of the HAMP domain of Halobacterial Transducer of Rhodopsin II (HtrII)(Photobiology- vision and photoreception. Actinobiology,Oral Presentations)

BioLOD.org: ontology-based integration of biological linked open data

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