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Machine and deep learning meet genome-scale metabolic modeling

PLoS computational biology, 2019-07, Vol.15 (7), p.e1007084-e1007084

2019

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GSimp: A Gibbs sampler based left-censored missing value imputation approach for metabolomics studies

PLoS computational biology, 2018-01, Vol.14 (1), p.e1005973-e1005973

2018

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Looking beyond Saccharomyces: the potential of non-conventional yeast species for desirable traits in bioethanol fermentation

FEMS yeast research, 2015-09, Vol.15 (6), p.fov053

2015

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Diversity and adaptive evolution of Saccharomyces wine yeast: a review

FEMS yeast research, 2015-11, Vol.15 (7), p.fov067

2015

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Traceability, reproducibility and wiki-exploration for "à-la-carte" reconstructions of genome-scale metabolic models

PLoS computational biology, 2018-05, Vol.14 (5), p.e1006146-e1006146

2018

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Sucrose and Saccharomyces cerevisiae: a relationship most sweet

FEMS yeast research, 2016-02, Vol.16 (1), p.fov107-fov107

2016

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Uncovering the genome-wide transcriptional responses of the filamentous fungus Aspergillus niger to lignocellulose using RNA sequencing

PLoS genetics, 2012-08, Vol.8 (8), p.e1002875-e1002875

2012

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Combining inferred regulatory and reconstructed metabolic networks enhances phenotype prediction in yeast

PLoS computational biology, 2017-05, Vol.13 (5), p.e1005489-e1005489

2017

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Fetal and Early Postnatal Programming and Its Influence on Adult Health

1, 2017

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Yeast peroxisomes: structure, functions and biotechnological opportunities

FEMS yeast research, 2016-06, Vol.16 (4), p.fow038

2016

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Curation of the genome annotation of Pichia pastoris (Komagataella phaffii) CBS7435 from gene level to protein function

FEMS yeast research, 2016-09, Vol.16 (6), p.fow051

2016

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Functional interrogation of Plasmodium genus metabolism identifies species- and stage-specific differences in nutrient essentiality and drug targeting

PLoS computational biology, 2018-01, Vol.14 (1), p.e1005895

2018

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Comparative genome-scale reconstruction of gapless metabolic networks for present and ancestral species

PLoS computational biology, 2014-02, Vol.10 (2), p.e1003465-e1003465

2014

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Systems biology

1st ed., 2017

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Advances in yeast systematics and phylogeny and their use as predictors of biotechnologically important metabolic pathways

FEMS yeast research, 2015-09, Vol.15 (6), p.fov050

2015

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Characterizing steady states of genome-scale metabolic networks in continuous cell cultures

PLoS computational biology, 2017-11, Vol.13 (11), p.e1005835

2017

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Evolutionary engineering of Saccharomyces cerevisiae for improved industrially important properties

FEMS yeast research, 2012-03, Vol.12 (2), p.171-182

2012

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Overexpression of diacylglycerol acyltransferase in Yarrowia lipolytica affects lipid body size, number and distribution

FEMS yeast research, 2016-09, Vol.16 (6), p.fow062

2016

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Clade- and species-specific features of genome evolution in the Saccharomycetaceae

FEMS yeast research, 2015-08, Vol.15 (5), p.fov035-fov035

2015

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Flux balance analysis predicts Warburg-like effects of mouse hepatocyte deficient in miR-122a

PLoS computational biology, 2017-07, Vol.13 (7), p.e1005618-e1005618

2017

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Spatial modeling of the membrane-cytosolic interface in protein kinase signal transduction

PLoS computational biology, 2018-04, Vol.14 (4), p.e1006075-e1006075

2018

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The promiscuous enzyme medium-chain 3-keto-acyl-CoA thiolase triggers a vicious cycle in fatty-acid beta-oxidation

PLoS computational biology, 2017-04, Vol.13 (4), p.e1005461-e1005461

2017

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Saccharomyces cerevisiae metabolism in ecological context

FEMS yeast research, 2016-11, Vol.16 (7), p.fow080

2016

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Rethinking cell growth models

FEMS yeast research, 2016-11, Vol.16 (7), p.fow081

2016

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The Russian Revolutions of 1917 : The Northern Impact and Beyond

2019

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Machine and deep learning meet genome-scale metabolic modeling

GSimp: A Gibbs sampler based left-censored missing value imputation approach for metabolomics studies

Looking beyond Saccharomyces: the potential of non-conventional yeast species for desirable traits in bioethanol fermentation

Diversity and adaptive evolution of Saccharomyces wine yeast: a review

Traceability, reproducibility and wiki-exploration for "à-la-carte" reconstructions of genome-scale metabolic models

Sucrose and Saccharomyces cerevisiae: a relationship most sweet

Uncovering the genome-wide transcriptional responses of the filamentous fungus Aspergillus niger to lignocellulose using RNA sequencing

Combining inferred regulatory and reconstructed metabolic networks enhances phenotype prediction in yeast

Fetal and Early Postnatal Programming and Its Influence on Adult Health

Yeast peroxisomes: structure, functions and biotechnological opportunities

Curation of the genome annotation of Pichia pastoris (Komagataella phaffii) CBS7435 from gene level to protein function

Functional interrogation of Plasmodium genus metabolism identifies species- and stage-specific differences in nutrient essentiality and drug targeting

Comparative genome-scale reconstruction of gapless metabolic networks for present and ancestral species

Systems biology

Advances in yeast systematics and phylogeny and their use as predictors of biotechnologically important metabolic pathways

Characterizing steady states of genome-scale metabolic networks in continuous cell cultures

Evolutionary engineering of Saccharomyces cerevisiae for improved industrially important properties

Overexpression of diacylglycerol acyltransferase in Yarrowia lipolytica affects lipid body size, number and distribution

Clade- and species-specific features of genome evolution in the Saccharomycetaceae

Flux balance analysis predicts Warburg-like effects of mouse hepatocyte deficient in miR-122a

Spatial modeling of the membrane-cytosolic interface in protein kinase signal transduction

The promiscuous enzyme medium-chain 3-keto-acyl-CoA thiolase triggers a vicious cycle in fatty-acid beta-oxidation

Saccharomyces cerevisiae metabolism in ecological context

Rethinking cell growth models

The Russian Revolutions of 1917 : The Northern Impact and Beyond

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