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A comparison between internal protein nanoenvironments of α-helices and β-sheets

PloS one, 2020-12, Vol.15 (12), p.e0244315-e0244315

2020

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Identification of new sphingomyelinases D in pathogenic fungi and other pathogenic organisms

PloS one, 2013-11, Vol.8 (11), p.e79240-e79240

2013

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Computational biology in Brazil

PLoS computational biology, 2007-10, Vol.3 (10), p.1845-1848

Neshich, Goran

2007

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Study of specific nanoenvironments containing α-helices in all-α and (α+β)+(α/β) proteins

PloS one, 2018-07, Vol.13 (7), p.e0200018-e0200018

2018

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Improving predictions of protein-protein interfaces by combining amino acid-specific classifiers based on structural and physicochemical descriptors with their weighted neighbor averages

PloS one, 2014-01, Vol.9 (1), p.e87107-e87107

2014

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Computational Biology Tools for Identifying Specific Ligand Binding Residues for Novel Agrochemical and Drug Design

Current protein & peptide science, 2015-01, Vol.16 (8), p.701

2015

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Analysis of binding properties and specificity through identification of the interface forming residues (IFR) for serine proteases in silico docked to different inhibitors

BMC structural biology, 2010-10, Vol.10 (1), p.36-36, Article 36

2010

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A comparison between internal protein nanoenvironments of [alpha]-helices and [beta]-sheets

PloS one, 2020-12, Vol.15 (12), p.e0244315

2020

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Citrus bioflavonoid, hesperetin, as inhibitor of two thrombin-like snake venom serine proteases isolated from Crotalus simus

Toxicon (Oxford), 2018-03, Vol.143, p.36-43

2018

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ISMB 2006

PLoS computational biology, 2006-02, Vol.2 (2), p.e11-e11

2006

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Study of specific nanoenvironments containing [alpha]-helices in all-[alpha] and proteins.(Research Article)

PloS one, 2018-07, Vol.13 (7)

2018

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STING Millennium Suite: integrated software for extensive analyses of 3d structures of proteins and their complexes

BMC bioinformatics, 2004-08, Vol.5 (1), p.107-107

2004

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Discovery of small molecule inhibitors for the snake venom metalloprotease BaP1 using in silico and in vitro tests

Bioorganic & medicinal chemistry letters, 2017-05, Vol.27 (9), p.2018-2022

2017

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Using linear algebra for protein structural comparison and classification

Genetics and molecular biology, 2009-01, Vol.32 (3), p.645-651

2009

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Identification of snake bradykinin-potentiating peptides (BPPs)-simile sequences in rat brain – Potential BPP-like precursor protein?

Biochemical pharmacology, 2015-08, Vol.96 (3), p.202-215

2015

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Multiple structure single parameter: analysis of a single protein nano environment descriptor characterizing a shared loci on structurally aligned proteins

Bioinformatics, 2016-06, Vol.32 (12), p.1885-1887

2016

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New mutation in the myocilin gene segregates with juvenile-onset open-angle glaucoma in a Brazilian family

Gene, 2013-07, Vol.523 (1), p.50-57

2013

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Protein cutoff scanning: A comparative analysis of cutoff dependent and cutoff free methods for prospecting contacts in proteins

Proteins, structure, function, and bioinformatics, 2009-02, Vol.74 (3), p.727-743

2009

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An opaque-2-like transcription factor from pearl millet

Protein and peptide letters, 2004-08, Vol.11 (4), p.345

2004

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Single nucleotide polymorphisms identification in expressed genes of Schistosoma mansoni

Molecular and biochemical parasitology, 2007-08, Vol.154 (2), p.134-140

2007

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Induction of Neutralizing Antibodies against Mutalysin-II from Lachesis muta muta Snake Venom Elicited by a Conformational B-cell Epitope Predicted by Blue Star Sting Data Base

Immunome research, 2015-01, Vol.11 (1), p.1-1

Machado, Ricardo Andrez

2015

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Improving Predictions of Protein-Protein Interfaces by Combining Amino Acid-Specific Classifiers Based on Structural and Physicochemical Descriptors with Their Weighted Neighbor Averages: e87107

PloS one, 2014-01, Vol.9 (1)

2014

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Identification of New Sphingomyelinases D in Pathogenic Fungi and Other Pathogenic Organisms: e79240

PloS one, 2013-11, Vol.8 (11)

2013

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Crystallographic structure and substrate-binding interactions of the molybdate-binding protein of the phytopathogen Xanthomonas axonopodis pv. citri

Biochimica et biophysica acta, 2008-02, Vol.1784 (2), p.393-399

2008

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Structural basis of the lisinopril-binding specificity in N- and C-domains of human somatic ACE

Biochemical and biophysical research communications, 2003-08, Vol.308 (2), p.219-226

2003

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A comparison between internal protein nanoenvironments of α-helices and β-sheets

Identification of new sphingomyelinases D in pathogenic fungi and other pathogenic organisms

Computational biology in Brazil

Study of specific nanoenvironments containing α-helices in all-α and (α+β)+(α/β) proteins

Improving predictions of protein-protein interfaces by combining amino acid-specific classifiers based on structural and physicochemical descriptors with their weighted neighbor averages

Computational Biology Tools for Identifying Specific Ligand Binding Residues for Novel Agrochemical and Drug Design

Analysis of binding properties and specificity through identification of the interface forming residues (IFR) for serine proteases in silico docked to different inhibitors

A comparison between internal protein nanoenvironments of [alpha]-helices and [beta]-sheets

Citrus bioflavonoid, hesperetin, as inhibitor of two thrombin-like snake venom serine proteases isolated from Crotalus simus

ISMB 2006

Study of specific nanoenvironments containing [alpha]-helices in all-[alpha] and proteins.(Research Article)

STING Millennium Suite: integrated software for extensive analyses of 3d structures of proteins and their complexes

Discovery of small molecule inhibitors for the snake venom metalloprotease BaP1 using in silico and in vitro tests

Using linear algebra for protein structural comparison and classification

Identification of snake bradykinin-potentiating peptides (BPPs)-simile sequences in rat brain – Potential BPP-like precursor protein?

Multiple structure single parameter: analysis of a single protein nano environment descriptor characterizing a shared loci on structurally aligned proteins

New mutation in the myocilin gene segregates with juvenile-onset open-angle glaucoma in a Brazilian family

Protein cutoff scanning: A comparative analysis of cutoff dependent and cutoff free methods for prospecting contacts in proteins

An opaque-2-like transcription factor from pearl millet

Single nucleotide polymorphisms identification in expressed genes of Schistosoma mansoni

Induction of Neutralizing Antibodies against Mutalysin-II from Lachesis muta muta Snake Venom Elicited by a Conformational B-cell Epitope Predicted by Blue Star Sting Data Base

Improving Predictions of Protein-Protein Interfaces by Combining Amino Acid-Specific Classifiers Based on Structural and Physicochemical Descriptors with Their Weighted Neighbor Averages: e87107

Identification of New Sphingomyelinases D in Pathogenic Fungi and Other Pathogenic Organisms: e79240

Crystallographic structure and substrate-binding interactions of the molybdate-binding protein of the phytopathogen Xanthomonas axonopodis pv. citri

Structural basis of the lisinopril-binding specificity in N- and C-domains of human somatic ACE

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