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GeFaST: An improved method for OTU assignment by generalising Swarm's fastidious clustering approach

BMC bioinformatics, 2018-09, Vol.19 (1), p.321-321, Article 321

2018

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Multiple marker parallel tag environmental DNA sequencing reveals a highly complex eukaryotic community in marine anoxic water

Molecular ecology, 2010-03, Vol.19 (s1), p.21-31

2010

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On the use of sequence-quality information in OTU clustering

PeerJ (San Francisco, CA), 2021-08, Vol.9, p.e11717-e11717, Article e11717

2021

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Combinatorics of RNA Secondary Structures with Base Triples

Journal of computational biology, 2015-07, Vol.22 (7), p.619-648

2015

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Evaluating the effect of disturbed ensemble distributions on SCFG based statistical sampling of RNA secondary structures

BMC bioinformatics, 2012-07, Vol.13 (1), p.159-159, Article 159

2012

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Topology and prediction of RNA pseudoknots

Bioinformatics, 2011-04, Vol.27 (8), p.1076-1085

2011

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RNA secondary structures in a polymer-zeta model how foldings should be shaped for sparsification to establish a linear speedup

Journal of mathematical biology, 2016-02, Vol.72 (3), p.527-571

2016

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Analysis of Pivot Sampling in Dual-Pivot Quicksort: A Holistic Analysis of Yaroslavskiy’s Partitioning Scheme

Algorithmica, 2016-08, Vol.75 (4), p.632-683, Article 632

2016

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Algebraic and combinatorial properties of common RNA pseudoknot classes with applications

Journal of computational biology, 2012-10, Vol.19 (10), p.1134-1150

2012

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Average Case and Distributional Analysis of Dual-Pivot Quicksort

ACM transactions on algorithms, 2015-01, Vol.11 (3), p.1-42

2015

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Delimiting operational taxonomic units for assessing ciliate environmental diversity using small-subunit rRNA gene sequences

Environmental microbiology reports, 2011-04, Vol.3 (2), p.154-158

2011

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Random generation of RNA secondary structures according to native distributions

Algorithms for molecular biology, 2011-10, Vol.6 (1), p.24-24, Article 24

2011

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Predicting RNA secondary structures with pseudoknots by MCMC sampling

Journal of mathematical biology, 2008-01, Vol.56 (1-2), p.161-181

2008

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Generation of RNA pseudoknot structures with topological genus filtration

Mathematical biosciences, 2013-10, Vol.245 (2), p.216-225

2013

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Entwurf und Analyse von Algorithmen: Eine Einführung in die Algorithmik mit Java

2, vollst überarb Aufl 2018 edition, 2018

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JAGUC--a software package for environmental diversity analyses

Journal of bioinformatics and computational biology, 2011-12, Vol.9 (6), p.749-773

2011

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New proofs of two q-analogues of Koshy's formula

Proceedings of the American Mathematical Society, 2015-12, Vol.143 (12), p.5027-5042

2015

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Fast string matching by using probabilities : On an optimal mismatch variant of Horspool's algorithm

Theoretical computer science, 2006-08, Vol.359 (1-3), p.329-343

NEBEL, Markus E

2006

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Maximum likelihood analysis of algorithms and data structures

Theoretical computer science, 2010, Vol.411 (1), p.188-212

2010

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Evaluation of a sophisticated SCFG design for RNA secondary structure prediction

Theory in biosciences = Theorie in den Biowissenschaften, 2011-12, Vol.130 (4), p.313-336

2011

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Entwurf und Analyse von Algorithmen

Nebel, Markus

2012, 2012

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Formale Grundlagen der Programmierung

Nebel, Markus

2012, 2012

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Applying Length-Dependent Stochastic Context-Free Grammars to RNA Secondary Structure Prediction

Algorithms, 2011-12, Vol.4 (4), p.223-238

2011

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Analysis of the Free Energy in a Stochastic RNA Secondary Structure Model

IEEE/ACM transactions on computational biology and bioinformatics, 2011-11, Vol.8 (6), p.1468-1482

2011

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Loops in canonical RNA pseudoknot structures

Journal of computational biology, 2011-12, Vol.18 (12), p.1793-1806

2011

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GeFaST: An improved method for OTU assignment by generalising Swarm's fastidious clustering approach

Multiple marker parallel tag environmental DNA sequencing reveals a highly complex eukaryotic community in marine anoxic water

On the use of sequence-quality information in OTU clustering

Combinatorics of RNA Secondary Structures with Base Triples

Evaluating the effect of disturbed ensemble distributions on SCFG based statistical sampling of RNA secondary structures

Topology and prediction of RNA pseudoknots

RNA secondary structures in a polymer-zeta model how foldings should be shaped for sparsification to establish a linear speedup

Analysis of Pivot Sampling in Dual-Pivot Quicksort: A Holistic Analysis of Yaroslavskiy’s Partitioning Scheme

Algebraic and combinatorial properties of common RNA pseudoknot classes with applications

Average Case and Distributional Analysis of Dual-Pivot Quicksort

Delimiting operational taxonomic units for assessing ciliate environmental diversity using small-subunit rRNA gene sequences

Random generation of RNA secondary structures according to native distributions

Predicting RNA secondary structures with pseudoknots by MCMC sampling

Generation of RNA pseudoknot structures with topological genus filtration

Entwurf und Analyse von Algorithmen: Eine Einführung in die Algorithmik mit Java

JAGUC--a software package for environmental diversity analyses

New proofs of two q-analogues of Koshy's formula

Fast string matching by using probabilities : On an optimal mismatch variant of Horspool's algorithm

Maximum likelihood analysis of algorithms and data structures

Evaluation of a sophisticated SCFG design for RNA secondary structure prediction

Entwurf und Analyse von Algorithmen

Formale Grundlagen der Programmierung

Applying Length-Dependent Stochastic Context-Free Grammars to RNA Secondary Structure Prediction

Analysis of the Free Energy in a Stochastic RNA Secondary Structure Model

Loops in canonical RNA pseudoknot structures

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