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genome‐scale metabolic network reconstruction of tomato (Solanum lycopersicum L.) and its application to photorespiratory metabolism

The Plant journal : for cell and molecular biology, 2016, Vol.85 (2), p.289-304

2016

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Mechanism-based and data-driven modeling in cell-free synthetic biology

Chemical communications (Cambridge, England), 2024-06, Vol.6 (51), p.6466-6475

2024

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Machine Learning for Postoperative Continuous Recovery Scores of Oncology Patients in Perioperative Care with Data from Wearables

Sensors (Basel, Switzerland), 2023-05, Vol.23 (9), p.4455

2023

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Leveraging continuous glucose monitoring for personalized modeling of insulin-regulated glucose metabolism

Scientific reports, 2024-04, Vol.14 (1), p.8037-12, Article 8037

2024

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Application of transfer learning to predict drug-induced human in vivo gene expression changes using rat in vitro and in vivo data

PloS one, 2023-11, Vol.18 (11), p.e0292030-e0292030

2023

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Quantifying postprandial glucose responses using a hybrid modeling approach: Combining mechanistic and data-driven models in The Maastricht Study

PloS one, 2023-07, Vol.18 (7), p.e0285820-e0285820

2023

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Personalized computational model quantifies heterogeneity in postprandial responses to oral glucose challenge

PLoS computational biology, 2021-03, Vol.17 (3), p.e1008852-e1008852

2021

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Altered bile acid kinetics contribute to postprandial hypoglycaemia after Roux-en-Y gastric bypass surgery

International Journal of Obesity, 2021-03, Vol.45 (3), p.619-630

2021

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A Systems Analysis of Phenotype Heterogeneity in APOE3Leiden.CETP Mice Induced by Long-Term High-Fat High-Cholesterol Diet Feeding

Nutrients, 2022-11, Vol.14 (22), p.4936

2022

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Left atrial reservoir strain as a predictor of cardiac outcome in patients with heart failure: the HaFaC cohort study

BMC cardiovascular disorders, 2022-03, Vol.22 (1), p.104-104, Article 104

2022

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Use of deep learning methods to translate drug-induced gene expression changes from rat to human primary hepatocytes

PloS one, 2020-08, Vol.15 (8), p.e0236392

2020

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Elucidating yeast glycolytic dynamics at steady state growth and glucose pulses through kinetic metabolic modeling

Metabolic engineering, 2023-05, Vol.77, p.128-142

2023

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Characterization of disease-specific cellular abundance profiles of chronic inflammatory skin conditions from deconvolution of biopsy samples

BMC medical genomics, 2019-08, Vol.12 (1), p.121-121, Article 121

2019

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A computational model of postprandial adipose tissue lipid metabolism derived using human arteriovenous stable isotope tracer data

PLoS computational biology, 2019-10, Vol.15 (10), p.e1007400-e1007400

2019

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Kinetic Modeling of Saccharomyces cerevisiae Central Carbon Metabolism: Achievements, Limitations, and Opportunities

Metabolites, 2022-01, Vol.12 (1), p.74

2022

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In vivo and in silico dynamics of the development of Metabolic Syndrome

PLoS computational biology, 2018-06, Vol.14 (6), p.e1006145-e1006145

2018

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Computational modelling of energy balance in individuals with Metabolic Syndrome

BMC systems biology, 2019-02, Vol.13 (1), p.24-24, Article 24

2019

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Serious digital games for diabetes Mellitus: A scoping review of its current State, Accessibility, and functionality for patients and healthcare providers

Diabetes research and clinical practice, 2024-10, Vol.216, p.111833, Article 111833

2024

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Does GLP-1 cause post-bariatric hypoglycemia: ‘Computer says no’

Computer methods and programs in biomedicine, 2024-12, Vol.257, p.108424, Article 108424

2024

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Dynamic modelling and analysis of biochemical networks: mechanism-based models and model-based experiments

Briefings in bioinformatics, 2006-12, Vol.7 (4), p.364-374

van Riel, Natal A W

2006

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Using Kinetic Modelling to Infer Adaptations in Saccharomyces cerevisiae Carbohydrate Storage Metabolism to Dynamic Substrate Conditions

Metabolites, 2023-01, Vol.13 (1), p.88

2023

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Intronic variant screening with targeted next-generation sequencing reveals first pseudoexon in LDLR in familial hypercholesterolemia

Atherosclerosis, 2021-03, Vol.321, p.14-20

2021

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Flux Balance Analysis of Plant Metabolism: The Effect of Biomass Composition and Model Structure on Model Predictions

Frontiers in plant science, 2016-04, Vol.7, p.537-537

2016

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Discrimination of U-14 Soccer Players by Level and Position

International journal of sports medicine, 2010-11, Vol.31 (11), p.790-796

2010

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Model‐based data analysis of individual human postprandial plasma bile acid responses indicates a major role for the gallbladder and intestine

Physiological reports, 2020-03, Vol.8 (5), p.e14358-n/a

2020

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genome‐scale metabolic network reconstruction of tomato (Solanum lycopersicum L.) and its application to photorespiratory metabolism

Mechanism-based and data-driven modeling in cell-free synthetic biology

Machine Learning for Postoperative Continuous Recovery Scores of Oncology Patients in Perioperative Care with Data from Wearables

Leveraging continuous glucose monitoring for personalized modeling of insulin-regulated glucose metabolism

Application of transfer learning to predict drug-induced human in vivo gene expression changes using rat in vitro and in vivo data

Quantifying postprandial glucose responses using a hybrid modeling approach: Combining mechanistic and data-driven models in The Maastricht Study

Personalized computational model quantifies heterogeneity in postprandial responses to oral glucose challenge

Altered bile acid kinetics contribute to postprandial hypoglycaemia after Roux-en-Y gastric bypass surgery

A Systems Analysis of Phenotype Heterogeneity in APOE3Leiden.CETP Mice Induced by Long-Term High-Fat High-Cholesterol Diet Feeding

Left atrial reservoir strain as a predictor of cardiac outcome in patients with heart failure: the HaFaC cohort study

Use of deep learning methods to translate drug-induced gene expression changes from rat to human primary hepatocytes

Elucidating yeast glycolytic dynamics at steady state growth and glucose pulses through kinetic metabolic modeling

Characterization of disease-specific cellular abundance profiles of chronic inflammatory skin conditions from deconvolution of biopsy samples

A computational model of postprandial adipose tissue lipid metabolism derived using human arteriovenous stable isotope tracer data

Kinetic Modeling of Saccharomyces cerevisiae Central Carbon Metabolism: Achievements, Limitations, and Opportunities

In vivo and in silico dynamics of the development of Metabolic Syndrome

Computational modelling of energy balance in individuals with Metabolic Syndrome

Serious digital games for diabetes Mellitus: A scoping review of its current State, Accessibility, and functionality for patients and healthcare providers

Does GLP-1 cause post-bariatric hypoglycemia: ‘Computer says no’

Dynamic modelling and analysis of biochemical networks: mechanism-based models and model-based experiments

Using Kinetic Modelling to Infer Adaptations in Saccharomyces cerevisiae Carbohydrate Storage Metabolism to Dynamic Substrate Conditions

Intronic variant screening with targeted next-generation sequencing reveals first pseudoexon in LDLR in familial hypercholesterolemia

Flux Balance Analysis of Plant Metabolism: The Effect of Biomass Composition and Model Structure on Model Predictions

Discrimination of U-14 Soccer Players by Level and Position

Model‐based data analysis of individual human postprandial plasma bile acid responses indicates a major role for the gallbladder and intestine

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