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Energy landscape analysis elucidates the multistability of ecological communities across environmental gradients

Ecological monographs, 2021-08, Vol.91 (3), p.1-21

2021

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Information and Statistical Analysis Pipeline for High-Throughput RNA Sequencing Data

Methods in molecular biology (Clifton, N.J.), 2020, Vol.2109, p.199

2020

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A quantitative model used to compare within-host SARS-CoV-2, MERS-CoV, and SARS-CoV dynamics provides insights into the pathogenesis and treatment of SARS-CoV-2

PLoS biology, 2021-03, Vol.19 (3), p.e3001128-e3001128

2021

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Weighted enrichment method for prediction of transcription regulators from transcriptome and global chromatin immunoprecipitation data

Nucleic acids research, 2016-06, Vol.44 (11), p.5010

2016

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Comparison of RNA-Seq analysis data between tracheal mite-infested and uninfested Japanese honey bees (Apis cerana japonica)

BMC research notes, 2023-06, Vol.16 (1), p.122-122, Article 122

2023

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A mathematical model of multiple delayed feedback control system of the gut microbiota—Antibiotics injection controlled by measured metagenomic data

Nonlinear analysis: real world applications, 2018-10, Vol.43, p.1-17

2018

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Cell-to-cell infection by HIV contributes over half of virus infection

eLife, 2015-10, Vol.4

2015

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Mathematical Analysis of a Transformed ODE from a PDE Multiscale Model of Hepatitis C Virus Infection

Bulletin of mathematical biology, 2019-05, Vol.81 (5), p.1427-1441

2019

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Detection of significant antiviral drug effects on COVID-19 with reasonable sample sizes in randomized controlled trials: A modeling study

PLoS medicine, 2021-07, Vol.18 (7), p.e1003660-e1003660

2021

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Dynamics of HIV infection in lymphoid tissue network

Journal of mathematical biology, 2016-03, Vol.72 (4), p.909-938

2016

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Antithetic effect of interferon-α on cell-free and cell-to-cell HIV-1 infection

PLoS computational biology, 2022-04, Vol.18 (4), p.e1010053-e1010053

2022

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Human-Specific Adaptations in Vpu Conferring Anti-tetherin Activity Are Critical for Efficient Early HIV-1 Replication In Vivo

Cell host & microbe, 2018-01, Vol.23 (1), p.110-120.e7

2018

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Development of a rapid scabies immunodiagnostic assay based on transcriptomic analysis of Sarcoptes scabiei var. nyctereutis

Scientific reports, 2021-03, Vol.11 (1), p.6455-6455, Article 6455

2021

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Revealing uninfected and infected target cell dynamics from peripheral blood data in highly and less pathogenic simian/human immunodeficiency virus infected Rhesus macaque

Journal of theoretical biology, 2019-10, Vol.479, p.29-36

2019

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COVID-19-related stress, exercise, and oral health-related quality of life among community-dwelling older adults who participated in the CHEER Iwamizawa project, Japan

Scientific reports, 2022-11, Vol.12 (1), p.20347-20347, Article 20347

2022

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A mathematical model for dynamics of soluble form of DNAM-1 as a biomarker for graft-versus-host disease

PloS one, 2020-02, Vol.15 (2), p.e0228508-e0228508

2020

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Quantifying the antiviral effect of APOBEC3 on HIV-1 infection in humanized mouse model

Journal of theoretical biology, 2020-08, Vol.498, p.110295-110295, Article 110295

2020

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Delayed feedback induced complex dynamics in an Escherichia coli and Tetrahymena system

Nonlinear dynamics, 2018-10, Vol.94 (2), p.1447-1466

2018

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An energy landscape approach reveals the potential key bacteria contributing to the development of inflammatory bowel disease

PloS one, 2024-06, Vol.19 (6), p.e0302151

2024

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HIV-1 competition experiments in humanized mice show that APOBEC3H imposes selective pressure and promotes virus adaptation

PLoS pathogens, 2017-05, Vol.13 (5), p.e1006348

2017

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Data mining for prediction and interpretation of bacterial population behavior in food

Frontiers in Food Science and Technology (Online), 2022-12, Vol.2

2022

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Multiscale modeling of HBV infection integrating intra- and intercellular viral propagation to analyze extracellular viral markers

PLoS computational biology, 2024-03, Vol.20 (3), p.e1011238-e1011238

2024

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Multiomics Investigation Revealing the Characteristics of HIV-1-Infected Cells In Vivo

Cell reports (Cambridge), 2020-07, Vol.32 (2), p.107887-107887, Article 107887

2020

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Calculation of final size for vector-transmitted epidemic model

Mathematical biosciences and engineering : MBE, 2019-01, Vol.16 (4), p.2219-2232

2019

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Energy landscape analysis elucidates the multistability of ecological communities across environmental gradients

Information and Statistical Analysis Pipeline for High-Throughput RNA Sequencing Data

A quantitative model used to compare within-host SARS-CoV-2, MERS-CoV, and SARS-CoV dynamics provides insights into the pathogenesis and treatment of SARS-CoV-2

Weighted enrichment method for prediction of transcription regulators from transcriptome and global chromatin immunoprecipitation data

The CCR4-NOT deadenylase complex controls Atg7-dependent cell death and heart function

Comparison of RNA-Seq analysis data between tracheal mite-infested and uninfested Japanese honey bees (Apis cerana japonica)

A mathematical model of multiple delayed feedback control system of the gut microbiota—Antibiotics injection controlled by measured metagenomic data

Cell-to-cell infection by HIV contributes over half of virus infection

Mathematical Analysis of a Transformed ODE from a PDE Multiscale Model of Hepatitis C Virus Infection

Detection of significant antiviral drug effects on COVID-19 with reasonable sample sizes in randomized controlled trials: A modeling study

Dynamics of HIV infection in lymphoid tissue network

Antithetic effect of interferon-α on cell-free and cell-to-cell HIV-1 infection

Human-Specific Adaptations in Vpu Conferring Anti-tetherin Activity Are Critical for Efficient Early HIV-1 Replication In Vivo

Development of a rapid scabies immunodiagnostic assay based on transcriptomic analysis of Sarcoptes scabiei var. nyctereutis

Revealing uninfected and infected target cell dynamics from peripheral blood data in highly and less pathogenic simian/human immunodeficiency virus infected Rhesus macaque

COVID-19-related stress, exercise, and oral health-related quality of life among community-dwelling older adults who participated in the CHEER Iwamizawa project, Japan

A mathematical model for dynamics of soluble form of DNAM-1 as a biomarker for graft-versus-host disease

Quantifying the antiviral effect of APOBEC3 on HIV-1 infection in humanized mouse model

Delayed feedback induced complex dynamics in an Escherichia coli and Tetrahymena system

An energy landscape approach reveals the potential key bacteria contributing to the development of inflammatory bowel disease

HIV-1 competition experiments in humanized mice show that APOBEC3H imposes selective pressure and promotes virus adaptation

Data mining for prediction and interpretation of bacterial population behavior in food

Multiscale modeling of HBV infection integrating intra- and intercellular viral propagation to analyze extracellular viral markers

Multiomics Investigation Revealing the Characteristics of HIV-1-Infected Cells In Vivo

Calculation of final size for vector-transmitted epidemic model

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