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Complex multicellularity in fungi: evolutionary convergence, single origin, or both?

Biological reviews of the Cambridge Philosophical Society, 2018-11, Vol.93 (4), p.1778-1794

2018

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Fruiting body form, not nutritional mode, is the major driver of diversification in mushroom-forming fungi

Proceedings of the National Academy of Sciences - PNAS, 2020-12, Vol.117 (51), p.32528-32534

2020

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Re-mind the gap! Insertion - deletion data reveal neglected phylogenetic potential of the nuclear ribosomal internal transcribed spacer (ITS) of fungi

PloS one, 2012-11, Vol.7 (11), p.e49794

2012

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Novel phylogenetic methods are needed for understanding gene function in the era of mega-scale genome sequencing

Nucleic acids research, 2020-03, Vol.48 (5), p.2209

2020

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Comparative genomics reveals the origin of fungal hyphae and multicellularity

Nature communications, 2019-09, Vol.10 (1), p.4080-13, Article 4080

2019

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Armillaria

Current biology, 2018-04, Vol.28 (7), p.R297-R298

2018

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ContScout: sensitive detection and removal of contamination from annotated genomes

Nature communications, 2024-01, Vol.15 (1), p.936-936, Article 936

2024

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Genetic Bases of Fungal White Rot Wood Decay Predicted by Phylogenomic Analysis of Correlated Gene-Phenotype Evolution

Molecular biology and evolution, 2017-01, Vol.34 (1), p.35-44

2017

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Evolutionary transition to the ectomycorrhizal habit in the genomes of a hyperdiverse lineage of mushroom‐forming fungi

The New phytologist, 2022-03, Vol.233 (5), p.2294-2309

2022

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Evolutionary Morphogenesis of Sexual Fruiting Bodies in Basidiomycota: Toward a New Evo-Devo Synthesis

Microbiology and molecular biology reviews, 2022-03, Vol.86 (1), p.e0001921-e0001921

2022

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Transcriptome data reveal conserved patterns of fruiting body development and response to heat stress in the mushroom-forming fungus Flammulina filiformis

PloS one, 2020-10, Vol.15 (10), p.e0239890-e0239890

2020

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Mycology: Rediscovery of a lost model fungus highlights the origin of mycorrhizal symbioses

Current biology, 2021-04, Vol.31 (7), p.R342-R344

2021

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Latent homology and convergent regulatory evolution underlies the repeated emergence of yeasts

Nature communications, 2014-07, Vol.5 (1), p.4471-4471, Article 4471

2014

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Evolution of opposing regulatory interactions underlies the emergence of eukaryotic cell cycle checkpoints

Scientific reports, 2021-05, Vol.11 (1), p.11122-10, Article 11122

2021

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Evolutionary innovations through gain and loss of genes in the ectomycorrhizal Boletales

The New phytologist, 2022-02, Vol.233 (3), p.1383-1400

2022

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Understanding the Evolutionary Processes of Fungal Fruiting Bodies: Correlated Evolution and Divergence Times in the Psathyrellaceae

Systematic biology, 2011-05, Vol.60 (3), p.303-317

2011

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Iteratively refined guide trees help improving alignment and phylogenetic inference in the mushroom family Bolbitiaceae

PloS one, 2013-02, Vol.8 (2), p.e56143-e56143

2013

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Unmatched Level of Molecular Convergence among Deeply Divergent Complex Multicellular Fungi

Molecular biology and evolution, 2020-08, Vol.37 (8), p.2228-2240

2020

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Dual RNA-Seq Profiling Unveils Mycoparasitic Activities of Trichoderma atroviride against Haploid Armillaria ostoyae in Antagonistic Interaction Assays

Microbiology spectrum, 2023-06, Vol.11 (3), p.e0462622-e0462622

2023

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Data partitions, Bayesian analysis and phylogeny of the zygomycetous fungal family Mortierellaceae, inferred from nuclear ribosomal DNA sequences

PloS one, 2011-11, Vol.6 (11), p.e27507-e27507

2011

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Gene age shapes the transcriptional landscape of sexual morphogenesis in mushroom-forming fungi (Agaricomycetes)

eLife, 2022-02, Vol.11

2022

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Fungal Phylogeny in the Age of Genomics: Insights Into Phylogenetic Inference From Genome-Scale Datasets

Advances in genetics, 2017, Vol.100, p.49-72

2017

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Hallmarks of Basidiomycete Soft- and White-Rot in Wood-Decay -Omics Data of Two Armillaria Species

Microorganisms (Basel), 2021-01, Vol.9 (1), p.149

2021

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Genomes of fungi and relatives reveal delayed loss of ancestral gene families and evolution of key fungal traits

Nature ecology & evolution, 2023-08, Vol.7 (8), p.1221

2023

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Complex multicellularity in fungi: evolutionary convergence, single origin, or both?

Fruiting body form, not nutritional mode, is the major driver of diversification in mushroom-forming fungi

Re-mind the gap! Insertion - deletion data reveal neglected phylogenetic potential of the nuclear ribosomal internal transcribed spacer (ITS) of fungi

Novel phylogenetic methods are needed for understanding gene function in the era of mega-scale genome sequencing

Comparative genomics reveals the origin of fungal hyphae and multicellularity

Armillaria

ContScout: sensitive detection and removal of contamination from annotated genomes

Genetic Bases of Fungal White Rot Wood Decay Predicted by Phylogenomic Analysis of Correlated Gene-Phenotype Evolution

Evolutionary transition to the ectomycorrhizal habit in the genomes of a hyperdiverse lineage of mushroom‐forming fungi

Evolutionary Morphogenesis of Sexual Fruiting Bodies in Basidiomycota: Toward a New Evo-Devo Synthesis

Transcriptome data reveal conserved patterns of fruiting body development and response to heat stress in the mushroom-forming fungus Flammulina filiformis

Mycology: Rediscovery of a lost model fungus highlights the origin of mycorrhizal symbioses

Latent homology and convergent regulatory evolution underlies the repeated emergence of yeasts

Evolution of opposing regulatory interactions underlies the emergence of eukaryotic cell cycle checkpoints

Evolutionary innovations through gain and loss of genes in the ectomycorrhizal Boletales

Understanding the Evolutionary Processes of Fungal Fruiting Bodies: Correlated Evolution and Divergence Times in the Psathyrellaceae

Gene family expansions and transcriptome signatures uncover fungal adaptations to wood decay

Iteratively refined guide trees help improving alignment and phylogenetic inference in the mushroom family Bolbitiaceae

Unmatched Level of Molecular Convergence among Deeply Divergent Complex Multicellular Fungi

Dual RNA-Seq Profiling Unveils Mycoparasitic Activities of Trichoderma atroviride against Haploid Armillaria ostoyae in Antagonistic Interaction Assays

Data partitions, Bayesian analysis and phylogeny of the zygomycetous fungal family Mortierellaceae, inferred from nuclear ribosomal DNA sequences

Gene age shapes the transcriptional landscape of sexual morphogenesis in mushroom-forming fungi (Agaricomycetes)

Fungal Phylogeny in the Age of Genomics: Insights Into Phylogenetic Inference From Genome-Scale Datasets

Hallmarks of Basidiomycete Soft- and White-Rot in Wood-Decay -Omics Data of Two Armillaria Species

Genomes of fungi and relatives reveal delayed loss of ancestral gene families and evolution of key fungal traits

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