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Ustiloxins, fungal cyclic peptides, are ribosomally synthesized in Ustilaginoidea virens

Bioinformatics, 2015-04, Vol.31 (7), p.981-985

2015

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Unveiling the Biosynthetic Pathway of the Ribosomally Synthesized and Post-translationally Modified Peptide Ustiloxin B in Filamentous Fungi

Angewandte Chemie (International ed.), 2016-07, Vol.55 (28), p.8072-8075

International ed. in English, 2016

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Prediction of detailed enzyme functions and identification of specificity determining residues by random forests

PloS one, 2014-01, Vol.9 (1), p.e84623

2014

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Characterization of the biosynthetic gene cluster for the ribosomally synthesized cyclic peptide ustiloxin B in Aspergillus flavus

Fungal genetics and biology, 2014-07, Vol.68, p.23-30

2014

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MIDDAS-M: Motif-Independent De Novo Detection of Secondary Metabolite Gene Clusters through the Integration of Genome Sequencing and Transcriptome Data

PloS one, 2013-12, Vol.8 (12), p.e84028-e84028

2013

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Class of cyclic ribosomal peptide synthetic genes in filamentous fungi

Fungal genetics and biology, 2016-01, Vol.86, p.58-70

2016

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A novel corpus of molecular to higher-order events that facilitates the understanding of the pathogenic mechanisms of idiopathic pulmonary fibrosis

Scientific reports, 2023-04, Vol.13 (1), p.5986-5986, Article 5986

2023

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Metric learning for enzyme active-site search

Bioinformatics, 2010-11, Vol.26 (21), p.2698-2704

2010

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Effectiveness of Nurse-Led Interventions for the Prevention of Mental Health Issues in Patients Leaving Intensive Care: A Systematic Review

Healthcare (Basel), 2022-09, Vol.10 (9), p.1716

2022

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EzCatDB: the enzyme reaction database, 2015 update

Nucleic acids research, 2015-01, Vol.43 (Database issue), p.D453

2015

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Discriminative structural approaches for enzyme active-site prediction

BMC bioinformatics, 2011-02, Vol.12 Suppl 1 (S1), p.S49-S49, Article S49

2011

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Using Bregmann Divergence Regularized Machine for Comparison of Molecular Local Structures

IEICE Transactions on Information and Systems, 2016/01/01, Vol.E99.D(1), pp.275-278

2016

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Expression of ustR and the Golgi protease KexB are required for ustiloxin B biosynthesis in Aspergillus oryzae

AMB Express, 2016-02, Vol.6 (1), p.9-9, Article 9

2016

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Relationships between functional subclasses and information contained in active-site and ligand-binding residues in diverse superfamilies

Proteins, structure, function, and bioinformatics, 2010-08, Vol.78 (10), p.2369-2384

2010

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Strong hydrophobic nature of cysteine residues in proteins

FEBS letters, 1999-09, Vol.458 (1), p.69-71

1999

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Systematic comparison of catalytic mechanisms of hydrolysis and transfer reactions classified in the EzCatDB database

Proteins, structure, function, and bioinformatics, 2007-01, Vol.66 (1), p.147-159

2007

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Unveiling the Biosynthetic Pathway of the Ribosomally Synthesized and Post-translationally Modified Peptide Ustiloxin B in Filamentous Fungi

Angewandte Chemie, 2016-07, Vol.128 (28), p.8204-8207

2016

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2P074 Systematic Analyses of Catalytic Mechanisms of Hydrolysis and Transfer Reactions(30. Protein function (II),Poster Session,Abstract,Meeting Program of EABS & BSJ 2006)

Seibutsu Butsuri, 2006/10/01, Vol.46(supplement2), pp.S314

Nagano, Nozomi

2006

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One Fold with Many Functions: The Evolutionary Relationships between TIM Barrel Families Based on their Sequences, Structures and Functions

Journal of Molecular Biology, 2002-08, Vol.321 (5), p.741-765

2002

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Barrel structures in proteins: Automatic identification and classification including a sequence analysis of TIM barrels

Protein science, 1999-10, Vol.8 (10), p.2072-2084

1999

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EzCatDB: the Enzyme Catalytic-mechanism Database

Nucleic acids research, 2005-01, Vol.33 (Database issue), p.D407

Nagano, Nozomi

2005

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Using Bregmann Divergence Regularized Machine for Comparison of Molecular Local Structures

IEICE transactions on information and systems, 2015-12, Vol.E99.D (1), p.275-278

2015

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Key challenges for the creation and maintenance of specialist protein resources

Proteins, structure, function, and bioinformatics, 2015-06, Vol.83 (6), p.1005-1013

2015

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Prediction of Detailed Enzyme Functions and Identification of Specificity Determining Residues by Random Forests: e84623

PloS one, 2014-01, Vol.9 (1)

2014

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Systematic Comparison of Catalytic Mechanisms of Hydrolysis and Transfer Reactions Classified in the EzCatDB Database

Seibutsu Butsuri, 2007, Vol.47(5), pp.323-327

NAGANO, Nozomi

2007

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Ustiloxins, fungal cyclic peptides, are ribosomally synthesized in Ustilaginoidea virens

Unveiling the Biosynthetic Pathway of the Ribosomally Synthesized and Post-translationally Modified Peptide Ustiloxin B in Filamentous Fungi

Prediction of detailed enzyme functions and identification of specificity determining residues by random forests

Characterization of the biosynthetic gene cluster for the ribosomally synthesized cyclic peptide ustiloxin B in Aspergillus flavus

MIDDAS-M: Motif-Independent De Novo Detection of Secondary Metabolite Gene Clusters through the Integration of Genome Sequencing and Transcriptome Data

Class of cyclic ribosomal peptide synthetic genes in filamentous fungi

A novel corpus of molecular to higher-order events that facilitates the understanding of the pathogenic mechanisms of idiopathic pulmonary fibrosis

Metric learning for enzyme active-site search

Effectiveness of Nurse-Led Interventions for the Prevention of Mental Health Issues in Patients Leaving Intensive Care: A Systematic Review

EzCatDB: the enzyme reaction database, 2015 update

Discriminative structural approaches for enzyme active-site prediction

Using Bregmann Divergence Regularized Machine for Comparison of Molecular Local Structures

Expression of ustR and the Golgi protease KexB are required for ustiloxin B biosynthesis in Aspergillus oryzae

Relationships between functional subclasses and information contained in active-site and ligand-binding residues in diverse superfamilies

Strong hydrophobic nature of cysteine residues in proteins

Systematic comparison of catalytic mechanisms of hydrolysis and transfer reactions classified in the EzCatDB database

Unveiling the Biosynthetic Pathway of the Ribosomally Synthesized and Post-translationally Modified Peptide Ustiloxin B in Filamentous Fungi

2P074 Systematic Analyses of Catalytic Mechanisms of Hydrolysis and Transfer Reactions(30. Protein function (II),Poster Session,Abstract,Meeting Program of EABS & BSJ 2006)

One Fold with Many Functions: The Evolutionary Relationships between TIM Barrel Families Based on their Sequences, Structures and Functions

Barrel structures in proteins: Automatic identification and classification including a sequence analysis of TIM barrels

EzCatDB: the Enzyme Catalytic-mechanism Database

Using Bregmann Divergence Regularized Machine for Comparison of Molecular Local Structures

Key challenges for the creation and maintenance of specialist protein resources

Prediction of Detailed Enzyme Functions and Identification of Specificity Determining Residues by Random Forests: e84623

Systematic Comparison of Catalytic Mechanisms of Hydrolysis and Transfer Reactions Classified in the EzCatDB Database

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