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DDX6 and its orthologs as modulators of cellular and viral RNA expression

Wiley interdisciplinary reviews. RNA, 2014-09, Vol.5 (5), p.659-678

2014

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RNA modification mapping with JACUSA2

Genome Biology, 2022-05, Vol.23 (1), p.115-115, Article 115

2022

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On the optimal design of metabolic RNA labeling experiments

PLoS computational biology, 2019-08, Vol.15 (8), p.e1007252-e1007252

2019

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Detecting m6A at single-molecular resolution via direct RNA sequencing and realistic training data

Nature communications, 2024-04, Vol.15 (1), p.3323-3323, Article 3323

2024

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Methylated HNRNPK acts on RPS19 to regulate ALOX15 synthesis in erythropoiesis

Nucleic acids research, 2021-04, Vol.49 (6), p.3507

2021

Volltextzugriff (PDF)

Identification of RNA-binding Proteins in Macrophages by Interactome Capture

Molecular & cellular proteomics, 2016-08, Vol.15 (8), p.2699-2714

2016

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Comprehensive identification of diverse ribosomal RNA modifications by targeted nanopore direct RNA sequencing and JACUSA2

RNA biology, 2023-12, Vol.20 (1), p.652-665

2023

Volltextzugriff (PDF)

Full-Length Spatial Transcriptomics Reveals the Unexplored Isoform Diversity of the Myocardium Post-MI

Frontiers in genetics, 2022-07, Vol.13, p.912572-912572

2022

Volltextzugriff (PDF)

Identification of DEAD-box RNA Helicase 6 (DDX6) as a Cellular Modulator of Vascular Endothelial Growth Factor Expression under Hypoxia

The Journal of biological chemistry, 2013-02, Vol.288 (8), p.5815-5827

2013

Volltextzugriff (PDF)

Hypoxia-induced gene expression results from selective mRNA partitioning to the endoplasmic reticulum

Nucleic acids research, 2015-03, Vol.43 (6), p.3219

2015

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Targeted Analysis of circRNA Expression in Patient Samples by Lexo-circSeq

Frontiers in molecular biosciences, 2022-06, Vol.9, p.875805-875805

2022

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Targeted Sequencing of Circular RNAs for Illumina-Based Counting and Nanopore Structure Determination

Methods in molecular biology (Clifton, N.J.), 2024, Vol.2765, p.127

2024

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Characterizing alternative splicing effects on protein interaction networks with LINDA

Bioinformatics (Oxford, England), 2023-06, Vol.39 (Supplement_1), p.i458-i464

2023

Volltextzugriff (PDF)

P23 Acts as Functional RBP in the Macrophage Inflammation Response

Frontiers in molecular biosciences, 2021-06, Vol.8, p.625608-625608

2021

Volltextzugriff (PDF)

Improved nanopore direct RNA sequencing of cardiac myocyte samples by selective mt-RNA depletion

Journal of molecular and cellular cardiology, 2022-02, Vol.163, p.175-186

2022

Volltextzugriff (PDF)

Mapping of RNA Modifications by Direct Nanopore Sequencing and JACUSA2

Methods in molecular biology (Clifton, N.J.), 2023-01, Vol.2624, p.241

2023

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Nanopore Detection of METTL3-Dependent m6A-Modified mRNA Reveals a New Mechanism Regulating Cardiomyocyte Mitochondrial Metabolism

Circulation (New York, N.Y.), 2024-04, Vol.149 (16), p.1319

2024

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A comparison of metabolic labeling and statistical methods to infer genome-wide dynamics of RNA turnover

Briefings in bioinformatics, 2021-11, Vol.22 (6)

2021

Volltextzugriff (PDF)

Adaptive sampling for nanopore direct RNA-sequencing

RNA (Cambridge), 2023-12, Vol.29 (12), p.1939

2023

Volltextzugriff (PDF)

Insight into the mechanism of AML del(9q) progression: hnRNP K targets the myeloid master regulators CEBPA (C/EBPα) and SPI1 (PU.1)

Biochimica et biophysica acta. Gene regulatory mechanisms, 2024-03, Vol.1867 (1), p.195004-195004, Article 195004

2024

Volltextzugriff (PDF)

Translational control mediated by hnRNP K links NMHC IIA to erythroid enucleation

Journal of cell science, 2016-03, Vol.129 (6), p.1141-1154

2016

Volltextzugriff (PDF)

Characterization of acute myeloid leukemia with del(9q) – Impact of the genes in the minimally deleted region

Leukemia research, 2019-01, Vol.76, p.15-23

2019

Volltextzugriff (PDF)

Biophysical and biochemical analysis of hnRNP K: arginine methylation, reversible aggregation and combinatorial binding to nucleic acids

Biological chemistry, 2014-07, Vol.395 (7-8), p.837

2014

Volltextzugriff (PDF)

Detecting m 6 A at single-molecular resolution via direct RNA sequencing and realistic training data

Nature communications, 2024-04, Vol.15 (1), p.3323

2024

Volltextzugriff (PDF)

Comprehensive identification of diverse ribosomal RNA modifications by targeted nanopore direct RNA sequencing and JACUSA2

RNA Biology, 2023, Vol.20 (1), p.652-665

2023

Volltextzugriff (PDF)

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DDX6 and its orthologs as modulators of cellular and viral RNA expression

RNA modification mapping with JACUSA2

On the optimal design of metabolic RNA labeling experiments

Detecting m6A at single-molecular resolution via direct RNA sequencing and realistic training data

Methylated HNRNPK acts on RPS19 to regulate ALOX15 synthesis in erythropoiesis

Identification of RNA-binding Proteins in Macrophages by Interactome Capture

Comprehensive identification of diverse ribosomal RNA modifications by targeted nanopore direct RNA sequencing and JACUSA2

Full-Length Spatial Transcriptomics Reveals the Unexplored Isoform Diversity of the Myocardium Post-MI

Identification of DEAD-box RNA Helicase 6 (DDX6) as a Cellular Modulator of Vascular Endothelial Growth Factor Expression under Hypoxia

Hypoxia-induced gene expression results from selective mRNA partitioning to the endoplasmic reticulum

Targeted Analysis of circRNA Expression in Patient Samples by Lexo-circSeq

Targeted Sequencing of Circular RNAs for Illumina-Based Counting and Nanopore Structure Determination

Characterizing alternative splicing effects on protein interaction networks with LINDA

P23 Acts as Functional RBP in the Macrophage Inflammation Response

Improved nanopore direct RNA sequencing of cardiac myocyte samples by selective mt-RNA depletion

Mapping of RNA Modifications by Direct Nanopore Sequencing and JACUSA2

Nanopore Detection of METTL3-Dependent m6A-Modified mRNA Reveals a New Mechanism Regulating Cardiomyocyte Mitochondrial Metabolism

A comparison of metabolic labeling and statistical methods to infer genome-wide dynamics of RNA turnover

Adaptive sampling for nanopore direct RNA-sequencing

Insight into the mechanism of AML del(9q) progression: hnRNP K targets the myeloid master regulators CEBPA (C/EBPα) and SPI1 (PU.1)

Translational control mediated by hnRNP K links NMHC IIA to erythroid enucleation

Characterization of acute myeloid leukemia with del(9q) – Impact of the genes in the minimally deleted region

Biophysical and biochemical analysis of hnRNP K: arginine methylation, reversible aggregation and combinatorial binding to nucleic acids

Detecting m 6 A at single-molecular resolution via direct RNA sequencing and realistic training data

Comprehensive identification of diverse ribosomal RNA modifications by targeted nanopore direct RNA sequencing and JACUSA2

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