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Fast Multi-blind Modification Search through Tandem Mass Spectrometry

Molecular & cellular proteomics, 2012-04, Vol.11 (4), p.M111.010199-M111.010199, Article M111.010199

2012

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Software eyes for protein post-translational modifications

Mass spectrometry reviews, 2015-03, Vol.34 (2), p.133-147

2015

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TIDD: tool-independent and data-dependent machine learning for peptide identification

BMC bioinformatics, 2022-03, Vol.23 (1), p.109-109, Article 109

2022

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Computational methods in mass spectrometry-based structural proteomics for studying protein structure, dynamics, and interactions

Computational and structural biotechnology journal, 2020-01, Vol.18, p.1391-1402

2020

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Oxidative photocatalysis on membranes triggers non-canonical pyroptosis

Nature communications, 2024-05, Vol.15 (1), p.4025-4025, Article 4025

2024

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Cataract-Associated New Mutants S175G/H181Q of βΒ2-Crystallin and P24S/S31G of γD-Crystallin Are Involved in Protein Aggregation by Structural Changes

International journal of molecular sciences, 2020-09, Vol.21 (18), p.6504

2020

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Multi-species Identification of Polymorphic Peptide Variants via Propagation in Spectral Networks

Molecular & cellular proteomics, 2016-11, Vol.15 (11), p.3501-3512

2016

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Proteogenomic strategies for identification of aberrant cancer peptides using large-scale next-generation sequencing data

Proteomics (Weinheim), 2014-12, Vol.14 (23-24), p.2719-2730

2014

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The Antibody Repertoire of Colorectal Cancer

Molecular & cellular proteomics, 2017-12, Vol.16 (12), p.2111-2124

2017

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deMix: Decoding Deuterated Distributions from Heterogeneous Protein States via HDX-MS

Scientific reports, 2019-02, Vol.9 (1), p.3176-3176, Article 3176

2019

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Advanced Proteogenomic Analysis Reveals Multiple Peptide Mutations and Complex Immunoglobulin Peptides in Colon Cancer

Journal of proteome research, 2015-09, Vol.14 (9), p.3555-3567

2015

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New Algorithm for the Identification of Intact Disulfide Linkages Based on Fragmentation Characteristics in Tandem Mass Spectra

Journal of proteome research, 2010-01, Vol.9 (1), p.626-635

2010

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Unrestrictive Identification of Multiple Post-translational Modifications from Tandem Mass Spectrometry Using an Error-tolerant Algorithm Based on an Extended Sequence Tag Approach

Molecular & cellular proteomics, 2008-12, Vol.7 (12), p.2452-2463

2008

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Reinvestigation of aminoacyl-tRNA synthetase core complex by affinity purification-mass spectrometry reveals TARSL2 as a potential member of the complex

PloS one, 2013-12, Vol.8 (12), p.e81734-e81734

2013

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DbyDeep: Exploration of MS-Detectable Peptides via Deep Learning

Analytical chemistry (Washington), 2023-08, Vol.95 (30), p.11193-11200

2023

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Deephos: predicted spectral database search for TMT-labeled phosphopeptides and its false discovery rate estimation

Bioinformatics, 2022-05, Vol.38 (11), p.2980-2987

2022

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Demystifying PTM Identification Using MODplus: Best Practices and Pitfalls

Methods in molecular biology (Clifton, N.J.), 2024, Vol.2836, p.37

2024

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MODplus: Robust and Unrestrictive Identification of Post-Translational Modifications Using Mass Spectrometry

Analytical chemistry (Washington), 2019-09, Vol.91 (17), p.11324-11333

2019

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CyGate Provides a Robust Solution for Automatic Gating of Single Cell Cytometry Data

Analytical chemistry (Washington), 2023-11, Vol.95 (46), p.16918-16926

2023

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High-throughput peptide quantification using mTRAQ reagent triplex

BMC bioinformatics, 2011-02, Vol.12 Suppl 1 (S1), p.S46-S46, Article S46

2011

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Multi-species Identification of Polymorphic Peptide Variants via Propagation in Spectral Networks

Molecular & cellular proteomics, 2016-11, Vol.15 (11)

2016

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Prediction of Novel Modifications by Unrestrictive Search of Tandem Mass Spectra

Journal of proteome research, 2009-10, Vol.8 (10), p.4418-4427

2009

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Proteogenomic Approach to UTR Peptide Identification

Journal of proteome research, 2020-01, Vol.19 (1), p.212-220

2020

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Quality Assessment of Tandem Mass Spectra Based on Cumulative Intensity Normalization

Journal of proteome research, 2006-12, Vol.5 (12), p.3241-3248

2006

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Thickness and Sphericity Control of Hollow Hard Silica Shells through Iron (III) Doping: Low Threshold Ultrasound Contrast Agents

Advanced functional materials, 2019-08, Vol.29 (33), p.n/a

2019

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Fast Multi-blind Modification Search through Tandem Mass Spectrometry

Software eyes for protein post-translational modifications

TIDD: tool-independent and data-dependent machine learning for peptide identification

Computational methods in mass spectrometry-based structural proteomics for studying protein structure, dynamics, and interactions

Oxidative photocatalysis on membranes triggers non-canonical pyroptosis

Cataract-Associated New Mutants S175G/H181Q of βΒ2-Crystallin and P24S/S31G of γD-Crystallin Are Involved in Protein Aggregation by Structural Changes

Multi-species Identification of Polymorphic Peptide Variants via Propagation in Spectral Networks

Proteogenomic strategies for identification of aberrant cancer peptides using large-scale next-generation sequencing data

The Antibody Repertoire of Colorectal Cancer

deMix: Decoding Deuterated Distributions from Heterogeneous Protein States via HDX-MS

Advanced Proteogenomic Analysis Reveals Multiple Peptide Mutations and Complex Immunoglobulin Peptides in Colon Cancer

New Algorithm for the Identification of Intact Disulfide Linkages Based on Fragmentation Characteristics in Tandem Mass Spectra

Unrestrictive Identification of Multiple Post-translational Modifications from Tandem Mass Spectrometry Using an Error-tolerant Algorithm Based on an Extended Sequence Tag Approach

Reinvestigation of aminoacyl-tRNA synthetase core complex by affinity purification-mass spectrometry reveals TARSL2 as a potential member of the complex

DbyDeep: Exploration of MS-Detectable Peptides via Deep Learning

Deephos: predicted spectral database search for TMT-labeled phosphopeptides and its false discovery rate estimation

Demystifying PTM Identification Using MODplus: Best Practices and Pitfalls

MODplus: Robust and Unrestrictive Identification of Post-Translational Modifications Using Mass Spectrometry

CyGate Provides a Robust Solution for Automatic Gating of Single Cell Cytometry Data

High-throughput peptide quantification using mTRAQ reagent triplex

Multi-species Identification of Polymorphic Peptide Variants via Propagation in Spectral Networks

Prediction of Novel Modifications by Unrestrictive Search of Tandem Mass Spectra

Proteogenomic Approach to UTR Peptide Identification

Quality Assessment of Tandem Mass Spectra Based on Cumulative Intensity Normalization

Thickness and Sphericity Control of Hollow Hard Silica Shells through Iron (III) Doping: Low Threshold Ultrasound Contrast Agents

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