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Predicting RNA-protein interactions using only sequence information

BMC bioinformatics, 2011-12, Vol.12 (1), p.489-489, Article 489

2011

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Transcriptome profiling of soybean (Glycine max) roots challenged with pathogenic and non-pathogenic isolates of Fusarium oxysporum

BMC genomics, 2015-12, Vol.16 (1087), p.1089-1089, Article 1089

2015

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Response to Persistent ER Stress in Plants: A Multiphasic Process That Transitions Cells from Prosurvival Activities to Cell Death

The Plant cell, 2018-06, Vol.30 (6), p.1220-1242

2018

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The genome of the soybean cyst nematode (Heterodera glycines) reveals complex patterns of duplications involved in the evolution of parasitism genes

BMC genomics, 2019-02, Vol.20 (1), p.119-14, Article 119

2019

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Computational Prediction of RNA-Protein Interactions

Methods in molecular biology (Clifton, N.J.), 2017, Vol.1543, p.169

2017

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Correction: The genome of the soybean cyst nematode (Heterodera glycines) reveals complex patterns of duplications involved in the evolution of parasitism genes

BMC genomics, 2024-05, Vol.25 (1), p.537-1, Article 537

2024

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Shared data science infrastructure for genomics data

BMC bioinformatics, 2019-08, Vol.20 (1), p.436-436, Article 436

2019

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Crowdsourced benchmarking of taxonomic metagenome profilers: lessons learned from the sbv IMPROVER Microbiomics challenge

BMC genomics, 2022-08, Vol.23 (1), p.1-624, Article 624

2022

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A Plasmodium-like virulence effector of the soybean cyst nematode suppresses plant innate immunity

The New phytologist, 2016-10, Vol.212 (2), p.444-460

2016

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Methods for Genome-Wide Methylome Profiling of Campylobacter jejuni

Methods in molecular biology (Clifton, N.J.), 2017-01, Vol.1512, p.199

2017

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A simple approach for protein structure discrimination based on the network pattern of conserved hydrophobic residues

Protein engineering, design and selection, 2006-06, Vol.19 (6), p.265-275

2006

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Molecular modeling of flexible arm‐mediated interactions between bacterial chemoreceptors and their modification enzyme

Protein science, 2009-08, Vol.18 (8), p.1702-1714

2009

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PlantGDB: a resource for comparative plant genomics

Nucleic acids research, 2008-01, Vol.36 (Database issue), p.D959-D965

2008

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A MOTIF-BASED METHOD FOR PREDICTING INTERFACIAL RESIDUES IN BOTH THE RNA AND PROTEIN COMPONENTS OF PROTEIN-RNA COMPLEXES

Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing, 2016, Vol.21, p.445

2016

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Transcriptional analysis of phloem-associated cells of potato

BMC genomics, 2015-09, Vol.16 (1), p.665-665, Article 665

2015

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Computational Tools for Investigating RNA-Protein Interaction Partners

Journal of computer science and systems biology, 2013, Vol.6 (4)

Muppirala, Usha K

2013

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Computational prediction of RNA-protein interaction partners and interfaces

Muppirala, Usha Kiran

2013

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Predicting RNA-protein interactions using only sequence information

Transcriptome profiling of soybean (Glycine max) roots challenged with pathogenic and non-pathogenic isolates of Fusarium oxysporum

Response to Persistent ER Stress in Plants: A Multiphasic Process That Transitions Cells from Prosurvival Activities to Cell Death

The genome of the soybean cyst nematode (Heterodera glycines) reveals complex patterns of duplications involved in the evolution of parasitism genes

Computational Prediction of RNA-Protein Interactions

Correction: The genome of the soybean cyst nematode (Heterodera glycines) reveals complex patterns of duplications involved in the evolution of parasitism genes

Shared data science infrastructure for genomics data

Crowdsourced benchmarking of taxonomic metagenome profilers: lessons learned from the sbv IMPROVER Microbiomics challenge

A Plasmodium-like virulence effector of the soybean cyst nematode suppresses plant innate immunity

Methods for Genome-Wide Methylome Profiling of Campylobacter jejuni

A simple approach for protein structure discrimination based on the network pattern of conserved hydrophobic residues

Molecular modeling of flexible arm‐mediated interactions between bacterial chemoreceptors and their modification enzyme

PlantGDB: a resource for comparative plant genomics

A MOTIF-BASED METHOD FOR PREDICTING INTERFACIAL RESIDUES IN BOTH THE RNA AND PROTEIN COMPONENTS OF PROTEIN-RNA COMPLEXES

Transcriptional analysis of phloem-associated cells of potato

Computational Tools for Investigating RNA-Protein Interaction Partners

Computational prediction of RNA-protein interaction partners and interfaces

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