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Single-cell RNA-seq denoising using a deep count autoencoder

Nature communications, 2019-01, Vol.10 (1), p.390-390, Article 390

2019

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Reconstructing gene regulatory dynamics from high-dimensional single-cell snapshot data

Bioinformatics (Oxford, England), 2015-06, Vol.31 (12), p.i89-i96

2015

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miTALOS v2: Analyzing Tissue Specific microRNA Function

PloS one, 2016-03, Vol.11 (3), p.e0151771-e0151771

2016

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Exome sequencing of osteosarcoma reveals mutation signatures reminiscent of BRCA deficiency

Nature communications, 2015-12, Vol.6 (1), p.8940-8940, Article 8940

2015

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netReg: network-regularized linear models for biological association studies

Bioinformatics, 2018-03, Vol.34 (5), p.896-898

2018

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Toll-like receptor 7/8 agonists stimulate plasmacytoid dendritic cells to initiate TH17-deviated acute contact dermatitis in human subjects

Journal of allergy and clinical immunology, 2018-04, Vol.141 (4), p.1320-1333.e11

2018

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BART-Seq: cost-effective massively parallelized targeted sequencing for genomics, transcriptomics, and single-cell analysis

Genome Biology, 2019-08, Vol.20 (1), p.155-16, Article 155

2019

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Predicting liver regeneration following major resection

Scientific reports, 2022-08, Vol.12 (1), p.13396-13396, Article 13396

2022

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Tolerance of repeated toxic injuries of murine livers is associated with steatosis and inflammation

Cell death & disease, 2023-07, Vol.14 (7), p.414-414, Article 414

2023

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A computational model to predict severity of atopic eczema from 30 serum proteins

Journal of allergy and clinical immunology, 2016-10, Vol.138 (4), p.1207-1210.e2

2016

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Network Embedding Across Multiple Tissues and Data Modalities Elucidates the Context of Host Factors Important for COVID-19 Infection

Frontiers in genetics, 2022-07, Vol.13, p.909714-909714

2022

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Integrative Analysis of MicroRNA and mRNA Data Reveals an Orchestrated Function of MicroRNAs in Skeletal Myocyte Differentiation in Response to TNF-α or IGF1

PloS one, 2015-08, Vol.10 (8), p.e0135284-e0135284

2015

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Phenome-transcriptome correlation unravels anxiety and depression related pathways

Journal of psychiatric research, 2011-07, Vol.45 (7), p.973-979

2011

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MicroRNA-Target Network Inference and Local Network Enrichment Analysis Identify Two microRNA Clusters with Distinct Functions in Head and Neck Squamous Cell Carcinoma

International journal of molecular sciences, 2015-12, Vol.16 (12), p.30204-30222

2015

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Patchwork organization of the yeast plasma membrane into numerous coexisting domains

Nature cell biology, 2012-06, Vol.14 (6), p.640

2012

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AURKA, DLGAP5, TPX2, KIF11 and CKAP5: Five specific mitosis-associated genes correlate with poor prognosis for non-small cell lung cancer patients

International journal of oncology, 2017-02, Vol.50 (2), p.365-372

2017

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N-acyl Taurines and Acylcarnitines Cause an Imbalance in Insulin Synthesis and Secretion Provoking β Cell Dysfunction in Type 2 Diabetes

Cell metabolism, 2017-06, Vol.25 (6), p.1334-1347.e4

2017

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Type I Immune Response Induces Keratinocyte Necroptosis and Is Associated with Interface Dermatitis

Journal of investigative dermatology, 2018-08, Vol.138 (8), p.1785-1794

2018

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A modular framework for gene set analysis integrating multilevel omics data

Nucleic acids research, 2013-11, Vol.41 (21), p.9622

2013

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Copy number aberrations from Affymetrix SNP 6.0 genotyping data—how accurate are commonly used prediction approaches?

Briefings in bioinformatics, 2020-01, Vol.21 (1), p.272-281

2020

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A novel molecular disease classifier for psoriasis and eczema

Experimental dermatology, 2016-10, Vol.25 (10), p.767-774

2016

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RAMONA: a Web application for gene set analysis on multilevel omics data

Bioinformatics (Oxford, England), 2015-01, Vol.31 (1), p.128-130

2015

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Single-cell RNA-seq denoising using a deep count autoencoder

Reconstructing gene regulatory dynamics from high-dimensional single-cell snapshot data

miTALOS v2: Analyzing Tissue Specific microRNA Function

Exome sequencing of osteosarcoma reveals mutation signatures reminiscent of BRCA deficiency

DeepWAS: Multivariate genotype-phenotype associations by directly integrating regulatory information using deep learning

netReg: network-regularized linear models for biological association studies

Toll-like receptor 7/8 agonists stimulate plasmacytoid dendritic cells to initiate TH17-deviated acute contact dermatitis in human subjects

BART-Seq: cost-effective massively parallelized targeted sequencing for genomics, transcriptomics, and single-cell analysis

Predicting liver regeneration following major resection

Tolerance of repeated toxic injuries of murine livers is associated with steatosis and inflammation

A computational model to predict severity of atopic eczema from 30 serum proteins

Network Embedding Across Multiple Tissues and Data Modalities Elucidates the Context of Host Factors Important for COVID-19 Infection

Integrative Analysis of MicroRNA and mRNA Data Reveals an Orchestrated Function of MicroRNAs in Skeletal Myocyte Differentiation in Response to TNF-α or IGF1

Phenome-transcriptome correlation unravels anxiety and depression related pathways

MicroRNA-Target Network Inference and Local Network Enrichment Analysis Identify Two microRNA Clusters with Distinct Functions in Head and Neck Squamous Cell Carcinoma

Model Based Targeting of IL-6-Induced Inflammatory Responses in Cultured Primary Hepatocytes to Improve Application of the JAK Inhibitor Ruxolitinib

Patchwork organization of the yeast plasma membrane into numerous coexisting domains

AURKA, DLGAP5, TPX2, KIF11 and CKAP5: Five specific mitosis-associated genes correlate with poor prognosis for non-small cell lung cancer patients

N-acyl Taurines and Acylcarnitines Cause an Imbalance in Insulin Synthesis and Secretion Provoking β Cell Dysfunction in Type 2 Diabetes

Type I Immune Response Induces Keratinocyte Necroptosis and Is Associated with Interface Dermatitis

A modular framework for gene set analysis integrating multilevel omics data

Copy number aberrations from Affymetrix SNP 6.0 genotyping data—how accurate are commonly used prediction approaches?

A novel molecular disease classifier for psoriasis and eczema

RAMONA: a Web application for gene set analysis on multilevel omics data

A novel longitudinal clustering approach to psychopathology across diagnostic entities in the hospital-based PsyCourse study

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