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Consensus Coexpression Network Analysis Identifies Key Regulators of Flower and Fruit Development in Wild Strawberry

Plant physiology (Bethesda), 2018-09, Vol.178 (1), p.202-216

2018

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Expanding the scope of plant genome engineering with Cas12a orthologs and highly multiplexable editing systems

Nature communications, 2021-03, Vol.12 (1), p.1944-1944, Article 1944

2021

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Sailfish enables alignment-free isoform quantification from RNA-seq reads using lightweight algorithms

Nature biotechnology, 2014-05, Vol.32 (5), p.462-464

2014

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Latent Dirichlet allocation mixture models for nucleotide sequence analysis

NAR genomics and bioinformatics, 2024-09, Vol.6 (3)

2024

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Yanagi: Fast and interpretable segment-based alternative splicing and gene expression analysis

BMC bioinformatics, 2019-08, Vol.20 (1), p.421-421, Article 421

2019

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Comprehensive analysis of alternative splicing in rice and comparative analyses with Arabidopsis

BMC genomics, 2006-12, Vol.7 (1), p.327-327, Article 327

2006

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Transcriptome analyses reveal SR45 to be a neutral splicing regulator and a suppressor of innate immunity in Arabidopsis thaliana

BMC genomics, 2017-10, Vol.18 (1), p.772-772, Article 772

2017

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Reducing storage requirements for biological sequence comparison

Bioinformatics, 2004-12, Vol.20 (18), p.3363-3369

2004

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Progerin mRNA expression in non-HGPS patients is correlated with widespread shifts in transcript isoforms

NAR genomics and bioinformatics, 2024-09, Vol.6 (3)

2024

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A computational survey of candidate exonic splicing enhancer motifs in the model plant Arabidopsis thaliana

BMC bioinformatics, 2007-05, Vol.8 (1), p.159-159, Article 159

2007

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Aberrant spliceosome activity via elevated intron retention and upregulation and phosphorylation of SF3B1 in chronic lymphocytic leukemia

Molecular therapy. Nucleic acids, 2024-06, Vol.35 (2), p.102202, Article 102202

2024

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Comparative transcriptomic analysis of apple and peach fruits: insights into fruit type specification

The Plant journal : for cell and molecular biology, 2022-03, Vol.109 (6), p.1614-1629

2022

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Evolutionary dynamics of U12-type spliceosomal introns

BMC evolutionary biology, 2010-02, Vol.10 (1), p.47, Article 47

2010

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A Genealogical Look at Shared Ancestry on the X Chromosome

Genetics (Austin), 2016-09, Vol.204 (1), p.57-75

2016

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Two Alternatively Spliced Isoforms of the Arabidopsis SR45 Protein Have Distinct Roles during Normal Plant Development

Plant physiology (Bethesda), 2009-07, Vol.150 (3), p.1450-1458

2009

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Rosaceae fruit transcriptome database (ROFT)—a useful genomic resource for comparing fruits of apple, peach, strawberry, and raspberry

Horticulture research, 2023-12, Vol.10 (12)

2023

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Comparison of red raspberry and wild strawberry fruits reveals mechanisms of fruit type specification

Plant physiology (Bethesda), 2023-09, Vol.193 (2), p.1016-1035

2023

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Expanding plant genome-editing scope by an engineered iSpyMacCas9 system that targets A-rich PAM sequences

Plant communications, 2021-03, Vol.2 (2), p.100101, Article 100101

2021

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Single-cell methylation sequencing data reveal succinct metastatic migration histories and tumor progression models

Genome research, 2023-07, Vol.33 (7), p.1089

2023

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SplicePort--an interactive splice-site analysis tool

Nucleic acids research, 2007-07, Vol.35 (Web Server issue), p.W285-W291

2007

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Improving the Arabidopsis genome annotation using maximal transcript alignment assemblies

Nucleic acids research, 2003-10, Vol.31 (19), p.5654-5666

2003

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Features generated for computational splice-site prediction correspond to functional elements

BMC bioinformatics, 2007-10, Vol.8 (1), p.410-410, Article 410

2007

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The Splicing Factor RNA-Binding Fox Protein 1 Mediates the Cellular Immune Response in Drosophila melanogaster

The Journal of immunology (1950), 2018-08, Vol.201 (4), p.1154-1164

2018

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Insights from GWAS: emerging landscape of mechanisms underlying complex trait disease

BMC genomics, 2015-06, Vol.16 Suppl 8 (S8), p.S4-S4, Article S4

2015

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Consensus Coexpression Network Analysis Identifies Key Regulators of Flower and Fruit Development in Wild Strawberry

Expanding the scope of plant genome engineering with Cas12a orthologs and highly multiplexable editing systems

Sailfish enables alignment-free isoform quantification from RNA-seq reads using lightweight algorithms

Latent Dirichlet allocation mixture models for nucleotide sequence analysis

Yanagi: Fast and interpretable segment-based alternative splicing and gene expression analysis

Comprehensive analysis of alternative splicing in rice and comparative analyses with Arabidopsis

Transcriptome analyses reveal SR45 to be a neutral splicing regulator and a suppressor of innate immunity in Arabidopsis thaliana

Reducing storage requirements for biological sequence comparison

Progerin mRNA expression in non-HGPS patients is correlated with widespread shifts in transcript isoforms

A computational survey of candidate exonic splicing enhancer motifs in the model plant Arabidopsis thaliana

Aberrant spliceosome activity via elevated intron retention and upregulation and phosphorylation of SF3B1 in chronic lymphocytic leukemia

Comparative transcriptomic analysis of apple and peach fruits: insights into fruit type specification

Evolutionary dynamics of U12-type spliceosomal introns

A Genealogical Look at Shared Ancestry on the X Chromosome

Two Alternatively Spliced Isoforms of the Arabidopsis SR45 Protein Have Distinct Roles during Normal Plant Development

Rosaceae fruit transcriptome database (ROFT)—a useful genomic resource for comparing fruits of apple, peach, strawberry, and raspberry

Comparison of red raspberry and wild strawberry fruits reveals mechanisms of fruit type specification

Expanding plant genome-editing scope by an engineered iSpyMacCas9 system that targets A-rich PAM sequences

Single-cell methylation sequencing data reveal succinct metastatic migration histories and tumor progression models

SplicePort--an interactive splice-site analysis tool

Improving the Arabidopsis genome annotation using maximal transcript alignment assemblies

Features generated for computational splice-site prediction correspond to functional elements

The Splicing Factor RNA-Binding Fox Protein 1 Mediates the Cellular Immune Response in Drosophila melanogaster

Predicting the impact of rare variants on RNA splicing in CAGI6

Insights from GWAS: emerging landscape of mechanisms underlying complex trait disease

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