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kegg_pull: a software package for the RESTful access and pulling from the Kyoto Encyclopedia of Gene and Genomes

BMC bioinformatics, 2023-03, Vol.24 (1), p.78-78, Article 78

2023

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A cautionary tale about properly vetting datasets used in supervised learning predicting metabolic pathway involvement

PloS one, 2024-05, Vol.19 (5), p.e0299583-e0299583

2024

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The metabolomics workbench file status website: a metadata repository promoting FAIR principles of metabolomics data

BMC bioinformatics, 2023-07, Vol.24 (1), p.299-299, Article 299

2023

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A chemical interpretation of protein electron density maps in the worldwide protein data bank

PloS one, 2020-08, Vol.15 (8), p.e0236894-e0236894

2020

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Moiety modeling framework for deriving moiety abundances from mass spectrometry measured isotopologues

BMC bioinformatics, 2019-10, Vol.20 (1), p.524-524, Article 524

2019

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GOcats: A tool for categorizing Gene Ontology into subgraphs of user-defined concepts

PloS one, 2020-06, Vol.15 (6), p.e0233311-e0233311

2020

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Academic Tracker: Software for tracking and reporting publications associated with authors and grants

PloS one, 2022-11, Vol.17 (11), p.e0277834-e0277834

2022

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md_harmonize: A Python Package for Atom-Level Harmonization of Public Metabolic Databases

Metabolites, 2023-12, Vol.13 (12), p.1199

2023

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Small Molecule Isotope Resolved Formula Enumeration: A Methodology for Assigning Isotopologues and Metabolite Formulas in Fourier Transform Mass Spectra

Analytical chemistry (Washington), 2019-07, Vol.91 (14), p.8933-8940

2019

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Predicting the Association of Metabolites with Both Pathway Categories and Individual Pathways

Metabolites, 2024-09, Vol.14 (9), p.510

2024

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Predicting the Pathway Involvement of Metabolites Based on Combined Metabolite and Pathway Features

Metabolites, 2024-05, Vol.14 (5), p.266

2024

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Polycomb deficiency drives a FOXP2-high aggressive state targetable by epigenetic inhibitors

Nature communications, 2023-01, Vol.14 (1), p.336-18, Article 336

2023

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InChI isotopologue and isotopomer specifications

Journal of cheminformatics, 2024-05, Vol.16 (1), p.54-54, Article 54

2024

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Entropy based analysis of vertebrate sperm protamines sequences: evidence of potential dityrosine and cysteine-tyrosine cross-linking in sperm protamines

BMC genomics, 2020-04, Vol.21 (1), p.277-277, Article 277

2020

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Benchmark Dataset for Training Machine Learning Models to Predict the Pathway Involvement of Metabolites

Metabolites, 2023-11, Vol.13 (11), p.1120

2023

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MESSES: Software for Transforming Messy Research Datasets into Clean Submissions to Metabolomics Workbench for Public Sharing

Metabolites, 2023-07, Vol.13 (7), p.842

2023

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Identifying and sharing per-and polyfluoroalkyl substances hot-spot areas and exposures in drinking water

Scientific data, 2023-06, Vol.10 (1), p.388-388, Article 388

2023

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A proposed FAIR approach for disseminating geospatial information system maps

Scientific data, 2023-06, Vol.10 (1), p.389-9, Article 389

2023

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Bilirubin Nanoparticle Treatment in Obese Mice Inhibits Hepatic Ceramide Production and Remodels Liver Fat Content

Metabolites, 2023-02, Vol.13 (2), p.215

2023

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Hepatic kinome atlas: An in‐depth identification of kinase pathways in liver fibrosis of humans and rodents

Hepatology (Baltimore, Md.), 2022-11, Vol.76 (5), p.1376-1388

2022

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Advances in gene ontology utilization improve statistical power of annotation enrichment

PloS one, 2019-08, Vol.14 (8), p.e0220728-e0220728

2019

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Stable isotope-resolved metabolomics and applications for drug development

Pharmacology & therapeutics (Oxford), 2012-03, Vol.133 (3), p.366-391

2012

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Finding High-Quality Metal Ion-Centric Regions Across the Worldwide Protein Data Bank

Molecules (Basel, Switzerland), 2019-09, Vol.24 (17), p.3179

2019

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Hierarchical Harmonization of Atom-Resolved Metabolic Reactions across Metabolic Databases

Metabolites, 2021-06, Vol.11 (7), p.431

2021

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Automated Analysis of Protein NMR Assignments and Structures

Chemical reviews, 2004-08, Vol.104 (8), p.3541-3556

2004

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kegg_pull: a software package for the RESTful access and pulling from the Kyoto Encyclopedia of Gene and Genomes

A cautionary tale about properly vetting datasets used in supervised learning predicting metabolic pathway involvement

The metabolomics workbench file status website: a metadata repository promoting FAIR principles of metabolomics data

A chemical interpretation of protein electron density maps in the worldwide protein data bank

Moiety modeling framework for deriving moiety abundances from mass spectrometry measured isotopologues

GOcats: A tool for categorizing Gene Ontology into subgraphs of user-defined concepts

Academic Tracker: Software for tracking and reporting publications associated with authors and grants

md_harmonize: A Python Package for Atom-Level Harmonization of Public Metabolic Databases

Small Molecule Isotope Resolved Formula Enumeration: A Methodology for Assigning Isotopologues and Metabolite Formulas in Fourier Transform Mass Spectra

Predicting the Association of Metabolites with Both Pathway Categories and Individual Pathways

Predicting the Pathway Involvement of Metabolites Based on Combined Metabolite and Pathway Features

Polycomb deficiency drives a FOXP2-high aggressive state targetable by epigenetic inhibitors

InChI isotopologue and isotopomer specifications

Entropy based analysis of vertebrate sperm protamines sequences: evidence of potential dityrosine and cysteine-tyrosine cross-linking in sperm protamines

Benchmark Dataset for Training Machine Learning Models to Predict the Pathway Involvement of Metabolites

MESSES: Software for Transforming Messy Research Datasets into Clean Submissions to Metabolomics Workbench for Public Sharing

Identifying and sharing per-and polyfluoroalkyl substances hot-spot areas and exposures in drinking water

A proposed FAIR approach for disseminating geospatial information system maps

Bilirubin Nanoparticle Treatment in Obese Mice Inhibits Hepatic Ceramide Production and Remodels Liver Fat Content

Hepatic kinome atlas: An in‐depth identification of kinase pathways in liver fibrosis of humans and rodents

Advances in gene ontology utilization improve statistical power of annotation enrichment

Stable isotope-resolved metabolomics and applications for drug development

Finding High-Quality Metal Ion-Centric Regions Across the Worldwide Protein Data Bank

Hierarchical Harmonization of Atom-Resolved Metabolic Reactions across Metabolic Databases

Automated Analysis of Protein NMR Assignments and Structures

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