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Evidence from simulation studies for selective constraints on the codon usage of the Angiosperm psbA gene

PLoS computational biology, 2021-10, Vol.17 (10), p.e1009535-e1009535

2021

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Codon Adaptation of Plastid Genes

PloS one, 2016-05, Vol.11 (5), p.e0154306-e0154306

2016

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Context and Mutation in Gymnosperm Chloroplast DNA

Genes, 2023-07, Vol.14 (7), p.1492

Morton, Brian R

2023

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Do Noncoding and Coding Sites in Angiosperm Chloroplast DNA Have Different Mutation Processes?

Genes, 2023-01, Vol.14 (1), p.148

Morton, Brian R

2023

Volltextzugriff (PDF)

Evidence for Strand Asymmetry in Different Plastid Genomes

Genes, 2023-01, Vol.14 (2), p.320

2023

Volltextzugriff (PDF)

Context-Dependent Mutation Dynamics, Not Selection, Explains the Codon Usage Bias of Most Angiosperm Chloroplast Genes

Journal of molecular evolution, 2022-02, Vol.90 (1), p.17-29

Morton, Brian R.

2022

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Context-Dependent Substitution Dynamics in Plastid DNA Across a Wide Range of Taxonomic Groups

Journal of molecular evolution, 2022-02, Vol.90 (1), p.44-55

Morton, Brian R.

2022

Volltextzugriff (PDF)

Substitution rate heterogeneity across hexanucleotide contexts in noncoding chloroplast DNA

G3 : genes - genomes - genetics, 2022-06, Vol.12 (8)

2022

Volltextzugriff (PDF)

Variation in Mutation Dynamics Across the Maize Genome as a Function of Regional and Flanking Base Composition

Genetics (Austin), 2006-01, Vol.172 (1), p.569-577

2006

Volltextzugriff (PDF)

Separating the effects of mutation and selection in producing DNA skew in bacterial chromosomes

BMC genomics, 2007-10, Vol.8 (1), p.369-369

2007

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The evolution of chloroplast RNA editing

Molecular biology and evolution, 2006-10, Vol.23 (10), p.1912-1921

2006

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Strand Asymmetry and Codon Usage Bias in the Chloroplast Genome of Euglena Gracilis

Proceedings of the National Academy of Sciences - PNAS, 1999-04, Vol.96 (9), p.5123-5128

Morton, Brian R.

1999

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The role of context-dependent mutations in generating compositional and codon usage bias in grass chloroplast DNA

Journal of molecular evolution, 2003-05, Vol.56 (5), p.616-629

Morton, Brian R

2003

Volltextzugriff (PDF)

Selective Constraints on Codon Usage of Nuclear Genes from Arabidopsis thaliana

Molecular biology and evolution, 2007-01, Vol.24 (1), p.122-129

2007

Volltextzugriff (PDF)

Substitution rate comparisons between grasses and palms: synonymous rate differences at the nuclear gene Adh parallel rate differences at the plastid gene rbcL

Proceedings of the National Academy of Sciences - PNAS, 1996-09, Vol.93 (19), p.10274-10279

1996

Volltextzugriff (PDF)

Assessing substitution variation across sites in grass chloroplast DNA

Journal of molecular evolution, 2007-06, Vol.64 (6), p.605-613

2007

Volltextzugriff (PDF)

Analysis of Site Frequency Spectra from Arabidopsis with Context-Dependent Corrections for Ancestral Misinference

Plant physiology (Bethesda), 2009-02, Vol.149 (2), p.616-624

2009

Volltextzugriff (PDF)

Evidence from simulation studies for selective constraints on the codon usage of the Angiosperm psbA gene

PLoS computational biology, 2021-10, Vol.17 (10)

2021

Volltextzugriff (PDF)

Rates and patterns of chloroplast DNA evolution

Proceedings of the National Academy of Sciences - PNAS, 1994-07, Vol.91 (15), p.6795-6801

1994

Volltextzugriff (PDF)

The atypical codon usage of the plant psbA gene may be the remnant of an ancestral bias

Proceedings of the National Academy of Sciences - PNAS, 1997-10, Vol.94 (21), p.11434-11438

1997

Volltextzugriff (PDF)

Selection on the codon bias of chloroplast and cyanelle genes in different plant and algal lineages

Journal of molecular evolution, 1998-04, Vol.46 (4), p.449-459

Morton, B.R. (Columbia University, New York, NY.)

1998

Volltextzugriff (PDF)

Selection at the Amino Acid Level Can Influence Synonymous Codon Usage: Implications for the Study of Codon Adaptation in Plastid Genes

Genetics (Austin), 2001-09, Vol.159 (1), p.347-358

Morton, Brian R

2001

Volltextzugriff (PDF)

Neighboring base composition and transversion/transition bias in a comparison of rice and maize chloroplast noncoding regions

Proceedings of the National Academy of Sciences - PNAS, 1995-10, Vol.92 (21), p.9717-9721

Morton, B.R. (Columbia University, New York, NY.)

1995

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Phylogenetic Congruence and Discordance Among One Morphological and Three Molecular Data Sets from Pontederiaceae

Systematic biology, 1998-12, Vol.47 (4), p.545-567

1998

Volltextzugriff (PDF)

Codon adaptation and synonymous substitution rate in diatom plastid genes

Molecular phylogenetics and evolution, 2002-07, Vol.24 (1), p.1-9

2002

Volltextzugriff (PDF)

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Evidence from simulation studies for selective constraints on the codon usage of the Angiosperm psbA gene

Codon Adaptation of Plastid Genes

Context and Mutation in Gymnosperm Chloroplast DNA

Do Noncoding and Coding Sites in Angiosperm Chloroplast DNA Have Different Mutation Processes?

Evidence for Strand Asymmetry in Different Plastid Genomes

Context-Dependent Mutation Dynamics, Not Selection, Explains the Codon Usage Bias of Most Angiosperm Chloroplast Genes

Context-Dependent Substitution Dynamics in Plastid DNA Across a Wide Range of Taxonomic Groups

Substitution rate heterogeneity across hexanucleotide contexts in noncoding chloroplast DNA

Variation in Mutation Dynamics Across the Maize Genome as a Function of Regional and Flanking Base Composition

Separating the effects of mutation and selection in producing DNA skew in bacterial chromosomes

The evolution of chloroplast RNA editing

Strand Asymmetry and Codon Usage Bias in the Chloroplast Genome of Euglena Gracilis

The role of context-dependent mutations in generating compositional and codon usage bias in grass chloroplast DNA

Selective Constraints on Codon Usage of Nuclear Genes from Arabidopsis thaliana

Substitution rate comparisons between grasses and palms: synonymous rate differences at the nuclear gene Adh parallel rate differences at the plastid gene rbcL

Assessing substitution variation across sites in grass chloroplast DNA

Analysis of Site Frequency Spectra from Arabidopsis with Context-Dependent Corrections for Ancestral Misinference

Evidence from simulation studies for selective constraints on the codon usage of the Angiosperm psbA gene

Rates and patterns of chloroplast DNA evolution

The atypical codon usage of the plant psbA gene may be the remnant of an ancestral bias

Selection on the codon bias of chloroplast and cyanelle genes in different plant and algal lineages

Selection at the Amino Acid Level Can Influence Synonymous Codon Usage: Implications for the Study of Codon Adaptation in Plastid Genes

Neighboring base composition and transversion/transition bias in a comparison of rice and maize chloroplast noncoding regions

Phylogenetic Congruence and Discordance Among One Morphological and Three Molecular Data Sets from Pontederiaceae

Codon adaptation and synonymous substitution rate in diatom plastid genes

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