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Electrochromic Materials and Devices

1, 2015

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Constraint-based models predict metabolic and associated cellular functions

Nature reviews. Genetics, 2014-02, Vol.15 (2), p.107-120

2014

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Using Genome-scale Models to Predict Biological Capabilities

Cell, 2015-05, Vol.161 (5), p.971-987

2015

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A biochemically-interpretable machine learning classifier for microbial GWAS

Nature communications, 2020-05, Vol.11 (1), p.2580-2580, Article 2580

2020

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Impact of insertion sequences on convergent evolution of Shigella species

PLoS genetics, 2020-07, Vol.16 (7), p.e1008931-e1008931

2020

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Machine learning and structural analysis of Mycobacterium tuberculosis pan-genome identifies genetic signatures of antibiotic resistance

Nature communications, 2018-10, Vol.9 (1), p.4306-9, Article 4306

2018

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Comparative pangenomics: analysis of 12 microbial pathogen pangenomes reveals conserved global structures of genetic and functional diversity

BMC genomics, 2022-01, Vol.23 (1), p.7-7, Article 7

2022

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Genome-scale metabolic reconstructions of multiple Salmonella strains reveal serovar-specific metabolic traits

Nature communications, 2018-09, Vol.9 (1), p.3771-12, Article 3771

2018

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Genome-scale metabolic reconstructions of multiple Escherichia coli strains highlight strain-specific adaptations to nutritional environments

Proceedings of the National Academy of Sciences - PNAS, 2013-12, Vol.110 (50), p.20338-20343

2013

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Machine learning with random subspace ensembles identifies antimicrobial resistance determinants from pan-genomes of three pathogens

PLoS computational biology, 2020-03, Vol.16 (3), p.e1007608-e1007608

2020

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Modularity, criticality, and evolvability of a developmental gene regulatory network

eLife, 2019-06, Vol.8

2019

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BOFdat: Generating biomass objective functions for genome-scale metabolic models from experimental data

PLoS computational biology, 2019-04, Vol.15 (4), p.e1006971-e1006971

2019

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Dynamics of sputum conversion during effective tuberculosis treatment: A systematic review and meta-analysis

PLoS medicine, 2021-04, Vol.18 (4), p.e1003566-e1003566

2021

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Dietary n-3 polyunsaturated fatty acids (PUFA) decrease obesity-associated Th17 cell-mediated inflammation during colitis

PloS one, 2012-11, Vol.7 (11), p.e49739-e49739

2012

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Global pathogenomic analysis identifies known and candidate genetic antimicrobial resistance determinants in twelve species

Nature communications, 2023-11, Vol.14 (1), p.7690-7690, Article 7690

2023

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Does hippocampal volume explain performance differences on hippocampal-dependant tasks?

NeuroImage (Orlando, Fla.), 2020-11, Vol.221, p.117211-117211, Article 117211

2020

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Rapid resistance development to three antistaphylococcal therapies in antibiotic-tolerant staphylococcus aureus bacteremia

PloS one, 2021-10, Vol.16 (10), p.e0258592-e0258592

2021

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Positional signaling and expression of ENHANCER OF TRY AND CPC1 are tuned to increase root hair density in response to phosphate deficiency in Arabidopsis thaliana

PloS one, 2013-10, Vol.8 (10), p.e75452-e75452

2013

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A mutual support mechanism through intercellular movement of CAPRICE and GLABRA3 can pattern the Arabidopsis root epidermis

PLoS biology, 2008-09, Vol.6 (9), p.e235-e235

2008

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A computational knowledge-base elucidates the response of Staphylococcus aureus to different media types

PLoS computational biology, 2019-01, Vol.15 (1), p.e1006644-e1006644

2019

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The Tolerance Model of Non-Inflammatory Immune Competence in Acute Pediatric Malnutrition: Origins, Evidence, Test of Fitness and Growth Potential

Nutrients, 2023-11, Vol.15 (23), p.4922

2023

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Cinacalcet Monotherapy in Neonatal Severe Hyperparathyroidism: A Case Study and Review

The journal of clinical endocrinology and metabolism, 2014-01, Vol.99 (1), p.7-11

2014

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Effect of Short-Chain Fatty Acids on Inflammatory and Metabolic Function in an Obese Skeletal Muscle Cell Culture Model

Nutrients, 2024-02, Vol.16 (4), p.500

2024

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Metabolic and behavioral features of acute hyperpurinergia and the maternal immune activation mouse model of autism spectrum disorder

PloS one, 2021-03, Vol.16 (3), p.e0248771-e0248771

2021

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Model-driven discovery of underground metabolic functions in Escherichia coli

Proceedings of the National Academy of Sciences - PNAS, 2015-01, Vol.112 (3), p.929-934

2015

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Electrochromic Materials and Devices

Constraint-based models predict metabolic and associated cellular functions

Using Genome-scale Models to Predict Biological Capabilities

A biochemically-interpretable machine learning classifier for microbial GWAS

Impact of insertion sequences on convergent evolution of Shigella species

Machine learning and structural analysis of Mycobacterium tuberculosis pan-genome identifies genetic signatures of antibiotic resistance

Comparative pangenomics: analysis of 12 microbial pathogen pangenomes reveals conserved global structures of genetic and functional diversity

Genome-scale metabolic reconstructions of multiple Salmonella strains reveal serovar-specific metabolic traits

Genome-scale metabolic reconstructions of multiple Escherichia coli strains highlight strain-specific adaptations to nutritional environments

Machine learning with random subspace ensembles identifies antimicrobial resistance determinants from pan-genomes of three pathogens

Modularity, criticality, and evolvability of a developmental gene regulatory network

BOFdat: Generating biomass objective functions for genome-scale metabolic models from experimental data

Dynamics of sputum conversion during effective tuberculosis treatment: A systematic review and meta-analysis

Dietary n-3 polyunsaturated fatty acids (PUFA) decrease obesity-associated Th17 cell-mediated inflammation during colitis

Global pathogenomic analysis identifies known and candidate genetic antimicrobial resistance determinants in twelve species

Does hippocampal volume explain performance differences on hippocampal-dependant tasks?

Rapid resistance development to three antistaphylococcal therapies in antibiotic-tolerant staphylococcus aureus bacteremia

Positional signaling and expression of ENHANCER OF TRY AND CPC1 are tuned to increase root hair density in response to phosphate deficiency in Arabidopsis thaliana

A mutual support mechanism through intercellular movement of CAPRICE and GLABRA3 can pattern the Arabidopsis root epidermis

A computational knowledge-base elucidates the response of Staphylococcus aureus to different media types

The Tolerance Model of Non-Inflammatory Immune Competence in Acute Pediatric Malnutrition: Origins, Evidence, Test of Fitness and Growth Potential

Cinacalcet Monotherapy in Neonatal Severe Hyperparathyroidism: A Case Study and Review

Effect of Short-Chain Fatty Acids on Inflammatory and Metabolic Function in an Obese Skeletal Muscle Cell Culture Model

Metabolic and behavioral features of acute hyperpurinergia and the maternal immune activation mouse model of autism spectrum disorder

Model-driven discovery of underground metabolic functions in Escherichia coli

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