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Machine learning for RNA sequencing-based intrinsic subtyping of breast cancer

Scientific reports, 2020-08, Vol.10 (1), p.14071-14071, Article 14071

2020

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Total Binding Affinity Profiles of Regulatory Regions Predict Transcription Factor Binding and Gene Expression in Human Cells

PloS one, 2015-11, Vol.10 (11), p.e0143627-e0143627

2015

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The Trithorax protein Ash1L promotes myoblast fusion by activating Cdon expression

Nature communications, 2018-11, Vol.9 (1), p.5026-14, Article 5026

2018

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The Emerging Roles of Long Non-Coding RNAs in Intellectual Disability and Related Neurodevelopmental Disorders

International journal of molecular sciences, 2022-05, Vol.23 (11), p.6118

2022

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Expanding the spectrum of genes responsible for hereditary motor neuropathies

Journal of neurology, neurosurgery and psychiatry, 2019-10, Vol.90 (10), p.1171

2019

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Targeting tumor-stroma communication by blocking endothelin-1 receptors sensitizes high-grade serous ovarian cancer to PARP inhibition

Cell death & disease, 2023-01, Vol.14 (1), p.5-14, Article 5

2023

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NR2F1 shapes mitochondria in the mouse brain, providing new insights into Bosch-Boonstra-Schaaf optic atrophy syndrome

Disease models & mechanisms, 2023-06, Vol.16 (6)

2023

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ZIKA virus elicits P53 activation and genotoxic stress in human neural progenitors similar to mutations involved in severe forms of genetic microcephaly and p53

Cell death & disease, 2016-10, Vol.7 (10), p.e2440-e2440

2016

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Laniakea@ReCaS: exploring the potential of customisable Galaxy on-demand instances as a cloud-based service

BMC bioinformatics, 2021-11, Vol.22 (Suppl 5), p.1-544, Article 544

2021

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Comprehensive genomic profiling on metastatic Melanoma: results from a network screening from 7 Italian Cancer Centres

Journal of translational medicine, 2024-01, Vol.22 (1), p.29-29, Article 29

2024

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SP1 and STAT3 Functionally Synergize to Induce the RhoU Small GTPase and a Subclass of Non-canonical WNT Responsive Genes Correlating with Poor Prognosis in Breast Cancer

Cancers, 2019-01, Vol.11 (1), p.101

2019

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3plex enables deep computational investigation of triplex forming lncRNAs

Computational and structural biotechnology journal, 2023-01, Vol.21, p.3091-3102

2023

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Dihydroorotate dehydrogenase inhibition reveals metabolic vulnerability in chronic myeloid leukemia

Cell death & disease, 2022-06, Vol.13 (6), p.576-13, Article 576

2022

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An atlas of tissue-specific conserved coexpression for functional annotation and disease gene prediction

European journal of human genetics : EJHG, 2011-11, Vol.19 (11), p.1173-1180

2011

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The RacGAP ArhGAP15 is a master negative regulator of neutrophil functions

Blood, 2011-07, Vol.118 (4), p.1099-1108

2011

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In silico prediction of lncRNA function using tissue specific and evolutionary conserved expression

BMC bioinformatics, 2017-03, Vol.18 (Suppl 5), p.144-144, Article 144

2017

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Evaluation of candidate genes from orphan FEB and GEFS+ loci by analysis of human brain gene expression atlases

PloS one, 2011-08, Vol.6 (8), p.e23149-e23149

2011

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Visual search of neuropil-enriched RNAs from brain in situ hybridization data through the image analysis pipeline hippo-ATESC

PloS one, 2013-09, Vol.8 (9), p.e74481-e74481

2013

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Roar: detecting alternative polyadenylation with standard mRNA sequencing libraries

BMC bioinformatics, 2016-10, Vol.17 (1), p.423-423, Article 423

2016

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B lymphocytes directly contribute to tissue fibrosis in patients with IgG4-related disease

Journal of allergy and clinical immunology, 2020-03, Vol.145 (3), p.968-981.e14

2020

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Evolutionary Rewiring of Human Regulatory Networks by Waves of Genome Expansion

American journal of human genetics, 2018-02, Vol.102 (2), p.207-218

2018

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The Roles of Multiparametric Magnetic Resonance Imaging, PCA3 and Prostate Health Index—Which is the Best Predictor of Prostate Cancer after a Negative Biopsy?

The Journal of urology, 2014-07, Vol.192 (1), p.60-66

2014

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Genome-wide Identification and Characterization of Fixed Human-Specific Regulatory Regions

American journal of human genetics, 2014-07, Vol.95 (1), p.39-48

2014

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The acetyltransferase p300 is recruited in trans to multiple enhancer sites by lncSmad7

Nucleic acids research, 2022-03, Vol.50 (5), p.2587

2022

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Machine learning for RNA sequencing-based intrinsic subtyping of breast cancer

Total Binding Affinity Profiles of Regulatory Regions Predict Transcription Factor Binding and Gene Expression in Human Cells

The Trithorax protein Ash1L promotes myoblast fusion by activating Cdon expression

The Emerging Roles of Long Non-Coding RNAs in Intellectual Disability and Related Neurodevelopmental Disorders

Expanding the spectrum of genes responsible for hereditary motor neuropathies

Targeting tumor-stroma communication by blocking endothelin-1 receptors sensitizes high-grade serous ovarian cancer to PARP inhibition

NR2F1 shapes mitochondria in the mouse brain, providing new insights into Bosch-Boonstra-Schaaf optic atrophy syndrome

ZIKA virus elicits P53 activation and genotoxic stress in human neural progenitors similar to mutations involved in severe forms of genetic microcephaly and p53

Laniakea@ReCaS: exploring the potential of customisable Galaxy on-demand instances as a cloud-based service

Comprehensive genomic profiling on metastatic Melanoma: results from a network screening from 7 Italian Cancer Centres

SP1 and STAT3 Functionally Synergize to Induce the RhoU Small GTPase and a Subclass of Non-canonical WNT Responsive Genes Correlating with Poor Prognosis in Breast Cancer

3plex enables deep computational investigation of triplex forming lncRNAs

Dihydroorotate dehydrogenase inhibition reveals metabolic vulnerability in chronic myeloid leukemia

Circulating miR-1246 and miR-485-3p as Promising Biomarkers of Clinical Response and Outcome in Melanoma Patients Treated with Targeted Therapy

An atlas of tissue-specific conserved coexpression for functional annotation and disease gene prediction

The RacGAP ArhGAP15 is a master negative regulator of neutrophil functions

In silico prediction of lncRNA function using tissue specific and evolutionary conserved expression

Evaluation of candidate genes from orphan FEB and GEFS+ loci by analysis of human brain gene expression atlases

Visual search of neuropil-enriched RNAs from brain in situ hybridization data through the image analysis pipeline hippo-ATESC

Roar: detecting alternative polyadenylation with standard mRNA sequencing libraries

B lymphocytes directly contribute to tissue fibrosis in patients with IgG4-related disease

Evolutionary Rewiring of Human Regulatory Networks by Waves of Genome Expansion

The Roles of Multiparametric Magnetic Resonance Imaging, PCA3 and Prostate Health Index—Which is the Best Predictor of Prostate Cancer after a Negative Biopsy?

Genome-wide Identification and Characterization of Fixed Human-Specific Regulatory Regions

The acetyltransferase p300 is recruited in trans to multiple enhancer sites by lncSmad7

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