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Continuous Distributed Representation of Biological Sequences for Deep Proteomics and Genomics

PloS one, 2015-11, Vol.10 (11), p.e0141287-e0141287

2015

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Probabilistic variable-length segmentation of protein sequences for discriminative motif discovery (DiMotif) and sequence embedding (ProtVecX)

Scientific reports, 2019-03, Vol.9 (1), p.3577-3577, Article 3577

2019

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Deep echocardiography: data-efficient supervised and semi-supervised deep learning towards automated diagnosis of cardiac disease

NPJ digital medicine, 2018-10, Vol.1 (1), p.59-59, Article 59

2018

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Molecular mechanics of Staphylococcus aureus adhesin, CNA, and the inhibition of bacterial adhesion by stretching collagen

PloS one, 2017-06, Vol.12 (6), p.e0179601-e0179601

2017

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PFP-WGAN: Protein function prediction by discovering Gene Ontology term correlations with generative adversarial networks

PloS one, 2021-02, Vol.16 (2), p.e0244430-e0244430

2021

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Machine learning for endoleak detection after endovascular aortic repair

Scientific reports, 2020-10, Vol.10 (1), p.18343-18343, Article 18343

2020

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Talin is required to increase stiffness of focal molecular complex in its early formation process

Biochemical and biophysical research communications, 2019-10, Vol.518 (3), p.579-583

2019

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Exploring the performance and explainability of fine-tuned BERT models for neuroradiology protocol assignment

BMC medical informatics and decision making, 2024-02, Vol.24 (1), p.40-40, Article 40

2024

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Nucleoporin's Like Charge Regions Are Major Regulators of FG Coverage and Dynamics Inside the Nuclear Pore Complex

PloS one, 2015-12, Vol.10 (12), p.e0143745-e0143745

2015

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Brownian dynamics simulation of nucleocytoplasmic transport: a coarse-grained model for the functional state of the nuclear pore complex

PLoS computational biology, 2011-06, Vol.7 (6), p.e1002049-e1002049

2011

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On the significance of microtubule flexural behavior in cytoskeletal mechanics

PloS one, 2011-10, Vol.6 (10), p.e25627-e25627

2011

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Emerging Trends in Heart Valve Engineering: Part I. Solutions for Future

Annals of biomedical engineering, 2015-04, Vol.43 (4), p.833-843

2015

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The interaction of RNA helicase DDX3 with HIV-1 Rev-CRM1-RanGTP complex during the HIV replication cycle

PloS one, 2015-02, Vol.10 (2), p.e0112969

2015

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Bridging Finite Element and Machine Learning Modeling: Stress Prediction of Arterial Walls in Atherosclerosis

Journal of biomechanical engineering, 2019-08, Vol.141 (8)

2019

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A sub-cellular viscoelastic model for cell population mechanics

PloS one, 2010-08, Vol.5 (8), p.e12097

2010

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Biomechanical properties of native and tissue engineered heart valve constructs

Journal of biomechanics, 2014-06, Vol.47 (9), p.1949-1963

2014

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The LINC and NPC relationship - it's complicated

Journal of cell science, 2016-09, Vol.129 (17), p.3219-3229

2016

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Actin Reorganization through Dynamic Interactions with Single-Wall Carbon Nanotubes

ACS nano, 2014-01, Vol.8 (1), p.188-197

2014

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MicroPheno: predicting environments and host phenotypes from 16S rRNA gene sequencing using a k-mer based representation of shallow sub-samples

Bioinformatics, 2018-07, Vol.34 (13), p.i32-i42

2018

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Molecular models of LINC complex assembly at the nuclear envelope

Journal of cell science, 2021-06, Vol.134 (12)

2021

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Carotid Atheroma Rupture Observed In Vivo and FSI-Predicted Stress Distribution Based on Pre-rupture Imaging

Annals of biomedical engineering, 2010-08, Vol.38 (8), p.2748-2765

2010

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Deep Learning for Perfusion Cerebral Blood Flow (CBF) and Volume (CBV) Predictions and Diagnostics

Annals of biomedical engineering, 2024-06, Vol.52 (6), p.1568-1575

2024

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Emerging Trends in Heart Valve Engineering: Part III. Novel Technologies for Mitral Valve Repair and Replacement

Annals of biomedical engineering, 2015-04, Vol.43 (4), p.858-870

2015

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A computational model of aging and calcification in the aortic heart valve

PloS one, 2009-06, Vol.4 (6), p.e5960-e5960

2009

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Accounting for diffusion in agent based models of reaction-diffusion systems with application to cytoskeletal diffusion

PloS one, 2011-09, Vol.6 (9), p.e25306-e25306

2011

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Continuous Distributed Representation of Biological Sequences for Deep Proteomics and Genomics

Probabilistic variable-length segmentation of protein sequences for discriminative motif discovery (DiMotif) and sequence embedding (ProtVecX)

Deep echocardiography: data-efficient supervised and semi-supervised deep learning towards automated diagnosis of cardiac disease

Molecular mechanics of Staphylococcus aureus adhesin, CNA, and the inhibition of bacterial adhesion by stretching collagen

PFP-WGAN: Protein function prediction by discovering Gene Ontology term correlations with generative adversarial networks

Machine learning for endoleak detection after endovascular aortic repair

Talin is required to increase stiffness of focal molecular complex in its early formation process

Exploring the performance and explainability of fine-tuned BERT models for neuroradiology protocol assignment

Nucleoporin's Like Charge Regions Are Major Regulators of FG Coverage and Dynamics Inside the Nuclear Pore Complex

Brownian dynamics simulation of nucleocytoplasmic transport: a coarse-grained model for the functional state of the nuclear pore complex

On the significance of microtubule flexural behavior in cytoskeletal mechanics

Emerging Trends in Heart Valve Engineering: Part I. Solutions for Future

The interaction of RNA helicase DDX3 with HIV-1 Rev-CRM1-RanGTP complex during the HIV replication cycle

Bridging Finite Element and Machine Learning Modeling: Stress Prediction of Arterial Walls in Atherosclerosis

A sub-cellular viscoelastic model for cell population mechanics

Biomechanical properties of native and tissue engineered heart valve constructs

The LINC and NPC relationship - it's complicated

Actin Reorganization through Dynamic Interactions with Single-Wall Carbon Nanotubes

MicroPheno: predicting environments and host phenotypes from 16S rRNA gene sequencing using a k-mer based representation of shallow sub-samples

Molecular models of LINC complex assembly at the nuclear envelope

Carotid Atheroma Rupture Observed In Vivo and FSI-Predicted Stress Distribution Based on Pre-rupture Imaging

Deep Learning for Perfusion Cerebral Blood Flow (CBF) and Volume (CBV) Predictions and Diagnostics

Emerging Trends in Heart Valve Engineering: Part III. Novel Technologies for Mitral Valve Repair and Replacement

A computational model of aging and calcification in the aortic heart valve

Accounting for diffusion in agent based models of reaction-diffusion systems with application to cytoskeletal diffusion

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