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Phylogenomic characterization and signs of microevolution in the 2022 multi-country outbreak of monkeypox virus

Nature medicine, 2022-08, Vol.28 (8), p.1569-1572

2022

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Genomic evidence for a hybrid origin of the yeast opportunistic pathogen Candida albicans

BMC biology, 2020-05, Vol.18 (1), p.48-48, Article 48

2020

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Hybridization and emergence of virulence in opportunistic human yeast pathogens

Yeast (Chichester, England), 2018-01, Vol.35 (1), p.5-20

2018

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Extreme diversification driven by parallel events of massive loss of heterozygosity in the hybrid lineage of Candida albicans

Genetics (Austin), 2021-02, Vol.217 (2)

2021

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Origin of fungal hybrids with pathogenic potential from warm seawater environments

Nature communications, 2023-10, Vol.14 (1), p.6919-6919, Article 6919

2023

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HaploTypo: a variant-calling pipeline for phased genomes

Bioinformatics, 2020-04, Vol.36 (8), p.2569-2571

2020

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ReporTree: a surveillance-oriented tool to strengthen the linkage between pathogen genetic clusters and epidemiological data

Genome medicine, 2023-06, Vol.15 (1), p.43-43, Article 43

2023

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Addendum: Phylogenomic characterization and signs of microevolution in the 2022 multi-country outbreak of monkeypox virus

Nature medicine, 2022-10, Vol.28 (10), p.2220-2221

2022

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Factors enforcing the species boundary between the human pathogens Cryptococcus neoformans and Cryptococcus deneoformans

PLoS genetics, 2021-01, Vol.17 (1), p.e1008871-e1008871

2021

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Differential Gene Expression of Malaria Parasite in Response to Red Blood Cell-Specific Glycolytic Intermediate 2,3-Diphosphoglycerate (2,3-DPG)

International journal of molecular sciences, 2023-12, Vol.24 (23), p.16869

2023

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Evolution of loss of heterozygosity patterns in hybrid genomes of Candida yeast pathogens

BMC biology, 2023-05, Vol.21 (1), p.105-105, Article 105

2023

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Multiple Hybridization Events Punctuate the Evolutionary Trajectory of Malassezia furfur

mBio, 2022-04, Vol.13 (2), p.e0385321-e0385321

2022

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Whole-Genome Sequencing of the Opportunistic Yeast Pathogen Candida inconspicua Uncovers Its Hybrid Origin

Frontiers in genetics, 2019, Vol.10, p.383-383

2019

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An inconspicuous identification: Isolation and identification of a novel Pichia species presenting as fungemia following cardiac surgery

International journal of infectious diseases, 2024-06, Vol.143, p.107040-107040, Article 107040

2024

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Genome Assemblies of Two Rare Opportunistic Yeast Pathogens: Diutina rugosa (syn. Candida rugosa ) and Trichomonascus ciferrii (syn. Candida ciferrii )

G3 : genes - genomes - genetics, 2019-12, Vol.9 (12), p.3921-3927

2019

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Genome analysis of Candida subhashii reveals its hybrid nature and dual mitochondrial genome conformations

DNA research, 2021-06, Vol.28 (3)

2021

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Differential Expression of Fungal Genes Determines the Lifestyle of Plectosphaerella Strains During Arabidopsis thaliana Colonization

Molecular plant-microbe interactions, 2020-11, Vol.33 (11), p.1299-1314

2020

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Genome analysis of five recently described species of the CUG-Ser clade uncovers Candida theae as a new hybrid lineage with pathogenic potential in the Candida parapsilosis species complex

DNA research, 2022-02, Vol.29 (2)

2022

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Misidentification of genome assemblies in public databases: The case of Naumovozyma dairenensis and proposal of a protocol to correct misidentifications

Yeast (Chichester, England), 2018-06, Vol.35 (6), p.425-429

2018

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Viral genetic clustering and transmission dynamics of the 2022 mpox outbreak in Portugal

Nature medicine, 2023-10, Vol.29 (10), p.2509-2517

2023

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Comparative morphological and molecular analysis confirms the presence of the West Nile virus mosquito vector, Culex univittatus, in the Iberian Peninsula

Parasites & vectors, 2016-11, Vol.9 (1), p.601-601, Article 601

2016

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Candida auris in Intensive Care Setting: The First Case Reported in Portugal

Journal of fungi (Basel), 2023-08, Vol.9 (8), p.837

2023

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First molecular identification of mosquito vectors of Dirofilaria immitis in continental Portugal

Parasites & vectors, 2015-03, Vol.8 (1), p.139-139, Article 139

2015

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Pathogenic Escherichia coli, Salmonella spp. and Campylobacter spp. in Two Natural Conservation Centers of Wildlife in Portugal: Genotypic and Phenotypic Characterization

Microorganisms (Basel), 2022-10, Vol.10 (11), p.2132

2022

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Karyon: a computational framework for the diagnosis of hybrids, aneuploids, and other nonstandard architectures in genome assemblies

Gigascience, 2022-01, Vol.11

2022

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Phylogenomic characterization and signs of microevolution in the 2022 multi-country outbreak of monkeypox virus

Genomic evidence for a hybrid origin of the yeast opportunistic pathogen Candida albicans

Hybridization and emergence of virulence in opportunistic human yeast pathogens

Extreme diversification driven by parallel events of massive loss of heterozygosity in the hybrid lineage of Candida albicans

Origin of fungal hybrids with pathogenic potential from warm seawater environments

HaploTypo: a variant-calling pipeline for phased genomes

ReporTree: a surveillance-oriented tool to strengthen the linkage between pathogen genetic clusters and epidemiological data

Addendum: Phylogenomic characterization and signs of microevolution in the 2022 multi-country outbreak of monkeypox virus

Factors enforcing the species boundary between the human pathogens Cryptococcus neoformans and Cryptococcus deneoformans

Differential Gene Expression of Malaria Parasite in Response to Red Blood Cell-Specific Glycolytic Intermediate 2,3-Diphosphoglycerate (2,3-DPG)

Evolution of loss of heterozygosity patterns in hybrid genomes of Candida yeast pathogens

Multiple Hybridization Events Punctuate the Evolutionary Trajectory of Malassezia furfur

Whole-Genome Sequencing of the Opportunistic Yeast Pathogen Candida inconspicua Uncovers Its Hybrid Origin

An inconspicuous identification: Isolation and identification of a novel Pichia species presenting as fungemia following cardiac surgery

Genome Assemblies of Two Rare Opportunistic Yeast Pathogens: Diutina rugosa (syn. Candida rugosa ) and Trichomonascus ciferrii (syn. Candida ciferrii )

Genome analysis of Candida subhashii reveals its hybrid nature and dual mitochondrial genome conformations

Differential Expression of Fungal Genes Determines the Lifestyle of Plectosphaerella Strains During Arabidopsis thaliana Colonization

Genome analysis of five recently described species of the CUG-Ser clade uncovers Candida theae as a new hybrid lineage with pathogenic potential in the Candida parapsilosis species complex

Misidentification of genome assemblies in public databases: The case of Naumovozyma dairenensis and proposal of a protocol to correct misidentifications

Viral genetic clustering and transmission dynamics of the 2022 mpox outbreak in Portugal

Comparative morphological and molecular analysis confirms the presence of the West Nile virus mosquito vector, Culex univittatus, in the Iberian Peninsula

Candida auris in Intensive Care Setting: The First Case Reported in Portugal

First molecular identification of mosquito vectors of Dirofilaria immitis in continental Portugal

Pathogenic Escherichia coli, Salmonella spp. and Campylobacter spp. in Two Natural Conservation Centers of Wildlife in Portugal: Genotypic and Phenotypic Characterization

Karyon: a computational framework for the diagnosis of hybrids, aneuploids, and other nonstandard architectures in genome assemblies

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