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Retooling phage display with electrohydrodynamic nanomixing and nanopore sequencing

Lab on a chip, 2019-12, Vol.19 (24), p.483-492

2019

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Ongoing human chromosome end extension revealed by analysis of BioNano and nanopore data

Scientific reports, 2018-11, Vol.8 (1), p.16616-9, Article 16616

2018

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Chiron: translating nanopore raw signal directly into nucleotide sequence using deep learning

Gigascience, 2018-05, Vol.7 (5)

2018

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Pasa: leveraging population pangenome graph to scaffold prokaryote genome assemblies

Nucleic acids research, 2024-02, Vol.52 (3), p.e15-e15

2024

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Efficient inference of large prokaryotic pangenomes with PanTA

Genome Biology, 2024-08, Vol.25 (1), p.1-16, Article 209

2024

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Scaffolding and completing genome assemblies in real-time with nanopore sequencing

Nature communications, 2017-02, Vol.8 (1), p.14515-10, Article 14515

2017

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AMRViz enables seamless genomics analysis and visualization of antimicrobial resistance

BMC bioinformatics, 2024-05, Vol.25 (1), p.193-193, Article 193

2024

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AMRomics: a scalable workflow to analyze large microbial genome collections

BMC genomics, 2024-07, Vol.25 (1), p.1-8, Article 709

2024

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Emerging technologies for telemedicine

Korean journal of radiology, 2012-01, Vol.13 Suppl 1 (Suppl 1), p.S21-S30

2012

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Inferring short tandem repeat variation from paired-end short reads

Nucleic acids research, 2014-02, Vol.42 (3), p.e16-e16

2014

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Real-time resolution of short-read assembly graph using ONT long reads

PLoS computational biology, 2021-01, Vol.17 (1), p.e1008586-e1008586

2021

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npInv: accurate detection and genotyping of inversions using long read sub-alignment

BMC bioinformatics, 2018-07, Vol.19 (1), p.261-261, Article 261

2018

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Simulating the dynamics of targeted capture sequencing with CapSim

Bioinformatics, 2018-03, Vol.34 (5), p.873-874

2018

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Realtime analysis and visualization of MinION sequencing data with npReader

Bioinformatics, 2016-03, Vol.32 (5), p.764-766

2016

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Whole genome deep sequencing analysis of cell-free DNA in samples with low tumour content

BMC cancer, 2022-01, Vol.22 (1), p.85-85, Article 85

2022

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Streaming algorithms for identification of pathogens and antibiotic resistance potential from real-time MinION(TM) sequencing

Gigascience, 2016-07, Vol.5 (1), p.32

2016

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Octapeptin C4 and polymyxin resistance occur via distinct pathways in an epidemic XDR Klebsiella pneumoniae ST258 isolate

Journal of antimicrobial chemotherapy, 2019-03, Vol.74 (3), p.582-593

2019

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Sequencing technologies and tools for short tandem repeat variation detection

Briefings in bioinformatics, 2015-03, Vol.16 (2), p.193-204

2015

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GtTR: Bayesian estimation of absolute tandem repeat copy number using sequence capture and high throughput sequencing

BMC bioinformatics, 2018-07, Vol.19 (1), p.267-267, Article 267

2018

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Real-time demultiplexing Nanopore barcoded sequencing data with npBarcode

Bioinformatics (Oxford, England), 2017-12, Vol.33 (24), p.3988-3990

2017

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PanKA: Leveraging population pangenome to predict antibiotic resistance

iScience, 2024-09, Vol.27 (9), p.110623, Article 110623

2024

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Multifactorial chromosomal variants regulate polymyxin resistance in extensively drug-resistant Klebsiella pneumoniae

Microbial genomics, 2018-03, Vol.4 (3)

2018

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Complete Genome Sequence of Klebsiella quasipneumoniae subsp. similipneumoniae Strain ATCC 700603

Genome announcements (Washington, DC), 2016-05, Vol.4 (3)

2016

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Repeat-encoded poly-Q tracts show statistical commonalities across species

BMC genomics, 2013-02, Vol.14 (1), p.76-76, Article 76

2013

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Statistical Enrichment of Epigenetic States Around Triplet Repeats that Can Undergo Expansions

Frontiers in neuroscience, 2016-03, Vol.10, p.92-92

2016

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Retooling phage display with electrohydrodynamic nanomixing and nanopore sequencing

Ongoing human chromosome end extension revealed by analysis of BioNano and nanopore data

Chiron: translating nanopore raw signal directly into nucleotide sequence using deep learning

Pasa: leveraging population pangenome graph to scaffold prokaryote genome assemblies

Efficient inference of large prokaryotic pangenomes with PanTA

Scaffolding and completing genome assemblies in real-time with nanopore sequencing

AMRViz enables seamless genomics analysis and visualization of antimicrobial resistance

AMRomics: a scalable workflow to analyze large microbial genome collections

Emerging technologies for telemedicine

Inferring short tandem repeat variation from paired-end short reads

Real-time resolution of short-read assembly graph using ONT long reads

npInv: accurate detection and genotyping of inversions using long read sub-alignment

Simulating the dynamics of targeted capture sequencing with CapSim

Realtime analysis and visualization of MinION sequencing data with npReader

Whole genome deep sequencing analysis of cell-free DNA in samples with low tumour content

Streaming algorithms for identification of pathogens and antibiotic resistance potential from real-time MinION(TM) sequencing

Octapeptin C4 and polymyxin resistance occur via distinct pathways in an epidemic XDR Klebsiella pneumoniae ST258 isolate

Sequencing technologies and tools for short tandem repeat variation detection

GtTR: Bayesian estimation of absolute tandem repeat copy number using sequence capture and high throughput sequencing

Real-time demultiplexing Nanopore barcoded sequencing data with npBarcode

PanKA: Leveraging population pangenome to predict antibiotic resistance

Multifactorial chromosomal variants regulate polymyxin resistance in extensively drug-resistant Klebsiella pneumoniae

Complete Genome Sequence of Klebsiella quasipneumoniae subsp. similipneumoniae Strain ATCC 700603

Repeat-encoded poly-Q tracts show statistical commonalities across species

Statistical Enrichment of Epigenetic States Around Triplet Repeats that Can Undergo Expansions

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