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Identification and Quantification of Proteoforms by Mass Spectrometry

Proteomics (Weinheim), 2019-05, Vol.19 (10), p.e1800361-n/a

2019

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Enhanced protein isoform characterization through long-read proteogenomics

Genome Biology, 2022-03, Vol.23 (1), p.69-28, Article 69

2022

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Serial KinderMiner (SKiM) discovers and annotates biomedical knowledge using co-occurrence and transformer models

BMC bioinformatics, 2023-11, Vol.24 (1), p.412-412, Article 412

2023

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An Algorithm to Improve the Speed of Semi and Non-specific Enzyme Searches in Proteomics

Current bioinformatics, 2020-01, Vol.15 (9), p.1065-1074

2020

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A Hybrid Spectral Library and Protein Sequence Database Search Strategy for Bottom-Up and Top-Down Proteomic Data Analysis

Journal of proteome research, 2022-11, Vol.21 (11), p.2609-2618

2022

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Ultrafast Peptide Label-Free Quantification with FlashLFQ

Journal of proteome research, 2018-01, Vol.17 (1), p.386-391

2018

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Precursor Intensity-Based Label-Free Quantification Software Tools for Proteomic and Multi-Omic Analysis within the Galaxy Platform

Proteomes, 2020-07, Vol.8 (3), p.15

2020

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Improving Proteoform Identifications in Complex Systems Through Integration of Bottom-Up and Top-Down Data

Journal of proteome research, 2020-08, Vol.19 (8), p.3510-3517

2020

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Fast, Free, and Flexible Peptide and Protein Quantification with FlashLFQ

Methods in molecular biology (Clifton, N.J.), 2023-01, Vol.2426, p.303

2023

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A Bayesian Null Interval Hypothesis Test Controls False Discovery Rates and Improves Sensitivity in Label-Free Quantitative Proteomics

Journal of proteome research, 2020-05, Vol.19 (5), p.1975-1981

2020

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Spritz: A Proteogenomic Database Engine

Journal of proteome research, 2021-04, Vol.20 (4), p.1826-1834

2021

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Identification of MS-Cleavable and Noncleavable Chemically Cross-Linked Peptides with MetaMorpheus

Journal of proteome research, 2018-07, Vol.17 (7), p.2370-2376

2018

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Enhanced Proteomic Data Analysis with MetaMorpheus

Methods in molecular biology (Clifton, N.J.), 2023-01, Vol.2426, p.35

2023

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Improved Protein Inference from Multiple Protease Bottom-Up Mass Spectrometry Data

Journal of proteome research, 2019-09, Vol.18 (9), p.3429-3438

2019

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Fused in sarcoma regulates DNA replication timing and kinetics

The Journal of biological chemistry, 2021-09, Vol.297 (3), p.101049-101049, Article 101049

2021

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Constructing Human Proteoform Families Using Intact-Mass and Top-Down Proteomics with a Multi-Protease Global Post-Translational Modification Discovery Database

Journal of proteome research, 2019-10, Vol.18 (10), p.3671-3680

2019

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Binary Classifier for Computing Posterior Error Probabilities in MetaMorpheus

Journal of proteome research, 2021-04, Vol.20 (4), p.1997-2004

2021

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Algorithms for the Interpretation of Mass Spectra in Quantitative and Qualitative Proteomics

Millikin, Robert J

2021

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Abstract 7600: Synergy of ZEN3694 and VIP152 for dual transcriptional targeting of BET and CDK9 in patient derived organoid models of pancreatic cancer

Cancer research (Chicago, Ill.), 2024-03, Vol.84 (6_Supplement), p.7600-7600

2024

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Back Cover: Identification and Quantification of Proteoforms by Mass Spectrometry

Proteomics (Weinheim), 2019-05, Vol.19 (10), p.n/a

2019

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Application of the 187Re-187Os geochronometer to crustal materials: Systematics, methodology, data reporting, and interpretation

Geological Society of America bulletin, 2024-09, Vol.136 (9-10), p.4091-4129

2024

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The chemical biology of hydropersulfides (RSSH): Chemical stability, reactivity and redox roles

Archives of biochemistry and biophysics, 2015-12, Vol.588, p.15-24

2015

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Interlaboratory Study for Characterizing Monoclonal Antibodies by Top-Down and Middle-Down Mass Spectrometry

Journal of the American Society for Mass Spectrometry, 2020-09, Vol.31 (9), p.1783-1802

2020

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Faster sorting algorithms discovered using deep reinforcement learning

Nature (London), 2023-06, Vol.618 (7964), p.257-263

2023

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Gray matter atrophy in patients with mild cognitive impairment/Alzheimer's disease over the course of developing delusions

International journal of geriatric psychiatry, 2016-01, Vol.31 (1), p.76-82

2016

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Identification and Quantification of Proteoforms by Mass Spectrometry

Enhanced protein isoform characterization through long-read proteogenomics

Serial KinderMiner (SKiM) discovers and annotates biomedical knowledge using co-occurrence and transformer models

An Algorithm to Improve the Speed of Semi and Non-specific Enzyme Searches in Proteomics

A Hybrid Spectral Library and Protein Sequence Database Search Strategy for Bottom-Up and Top-Down Proteomic Data Analysis

Ultrafast Peptide Label-Free Quantification with FlashLFQ

Precursor Intensity-Based Label-Free Quantification Software Tools for Proteomic and Multi-Omic Analysis within the Galaxy Platform

Improving Proteoform Identifications in Complex Systems Through Integration of Bottom-Up and Top-Down Data

Fast, Free, and Flexible Peptide and Protein Quantification with FlashLFQ

A Bayesian Null Interval Hypothesis Test Controls False Discovery Rates and Improves Sensitivity in Label-Free Quantitative Proteomics

Spritz: A Proteogenomic Database Engine

Identification of MS-Cleavable and Noncleavable Chemically Cross-Linked Peptides with MetaMorpheus

Enhanced Proteomic Data Analysis with MetaMorpheus

Improved Protein Inference from Multiple Protease Bottom-Up Mass Spectrometry Data

Fused in sarcoma regulates DNA replication timing and kinetics

Constructing Human Proteoform Families Using Intact-Mass and Top-Down Proteomics with a Multi-Protease Global Post-Translational Modification Discovery Database

Binary Classifier for Computing Posterior Error Probabilities in MetaMorpheus

Algorithms for the Interpretation of Mass Spectra in Quantitative and Qualitative Proteomics

Abstract 7600: Synergy of ZEN3694 and VIP152 for dual transcriptional targeting of BET and CDK9 in patient derived organoid models of pancreatic cancer

Back Cover: Identification and Quantification of Proteoforms by Mass Spectrometry

Application of the 187Re-187Os geochronometer to crustal materials: Systematics, methodology, data reporting, and interpretation

The chemical biology of hydropersulfides (RSSH): Chemical stability, reactivity and redox roles

Interlaboratory Study for Characterizing Monoclonal Antibodies by Top-Down and Middle-Down Mass Spectrometry

Faster sorting algorithms discovered using deep reinforcement learning

Gray matter atrophy in patients with mild cognitive impairment/Alzheimer's disease over the course of developing delusions

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